Browse Element(s) Details


OsAffx.15035.1.S1_at

Description tigr:9633.m03737
TID=OsAffx.15035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4007011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40030NANA5+23428589..23429032hypothetical protein
LOC_Os05g40040OsAffx.15034.1.S1_at11/115+23431884..23436764expressed protein
LOC_Os05g40050OsAffx.27250.2.S1_at11/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40050OsAffx.22147.1.S1_x_at1/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40060OsAffx.4567.2.S1_at11/115+23446217..23447293WRKY DNA binding domain containing protein, expressed
LOC_Os05g40070OsAffx.15035.1.S1_at11/115+23453168..23455737WRKY DNA binding domain containing protein
LOC_Os05g40080OsAffx.4567.1.S1_at11/115+23467405..23468510WRKY DNA binding domain containing protein
LOC_Os05g40090OsAffx.24046.2.S1_x_at11/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.7.S1_x_at4/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.3.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.5.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40100OsAffx.10222.1.S1_x_at2/115+23473740..23475130hypothetical protein
LOC_Os05g40100OsAffx.727.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.10263.1.S1_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.51841.1.S1_x_at1/115+23473740..23475130hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15035.1.S1_at--1119--1571Chr05:23454878..23455370 (25 bp)
AGCTCATCGAGACGGTATTCATTAC
LOC_Os05g40070
OsAffx.15035.1.S1_at--295--7871Chr05:23454865..23454889 (25 bp)
GGTATTCATTACTACGACACCAGAA
LOC_Os05g40070
OsAffx.15035.1.S1_at--578--9871Chr05:23453396..23453420 (25 bp)
TACAGTGTTCCAAGATCAGCCCAGT
LOC_Os05g40070
OsAffx.15035.1.S1_at--1156--6431Chr05:23453383..23453407 (25 bp)
GATCAGCCCAGTTCAAGCAGTACTA
LOC_Os05g40070
OsAffx.15035.1.S1_at--1095--6751Chr05:23453373..23453397 (25 bp)
GTTCAAGCAGTACTAATTCCCAAGT
LOC_Os05g40070
OsAffx.15035.1.S1_at--1025--71Chr05:23453358..23453382 (25 bp)
ATTCCCAAGTGCTCGACTTCACAAA
LOC_Os05g40070
OsAffx.15035.1.S1_at--317--2051Chr05:23453343..23453367 (25 bp)
ACTTCACAAAAGCATCCATTTCCTC
LOC_Os05g40070
OsAffx.15035.1.S1_at--399--10491Chr05:23453314..23453338 (25 bp)
TTAATGGATTCTCATGTCGGCGCGC
LOC_Os05g40070
OsAffx.15035.1.S1_at--768--1451Chr05:23453264..23453288 (25 bp)
AGAAGTTCCCTCCATTGATGAGAGC
LOC_Os05g40070
OsAffx.15035.1.S1_at--361--5251Chr05:23453235..23453259 (25 bp)
GAATCATGTCCACAATTATGCGTAA
LOC_Os05g40070
OsAffx.15035.1.S1_at--1109--3691Chr05:23453210..23453234 (25 bp)
CTATGGATCCTATGGCGACTATGAT
LOC_Os05g40070
Target Sequence 
AGCTCATCGAGACGGTATTCATTACTACGACACCAGAAAATGATGGGTTTCACTGGAGGAAATATGGCGAGAAGAATATC
CTCAACAGTGAATTTCGAAAGTTATACTACAGATGTGGTTACAGTGATGAGCGAAAGTGTCAAGCAAAGAAATATGTGCA
GCAAGAAAACAACAAACATCCCCCAGAGTTCAGGGTCACCCTCACCAACGAGCATACATGCAATACAGTGTTCCAAGATC
AGCCCAGTTCAAGCAGTACTAATTCCCAAGTGCTCGACTTCACAAAAGCATCCATTTCCTCATCATTAATGGATTCTCAT
GTCGGCGCGCCGATCTTGAAGGAAGAGGAAGAAGAAGAAGTTCCCTCCATTGATGAGAGCACAAGAATCATGTCCACAAT
TATGCGTAACTATGGATCCTATGGCGACTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis