Browse Element(s) Details


OsAffx.15108.1.S1_at

Description tigr:9633.m04205
TID=OsAffx.15108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4500011/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44960OsAffx.15106.3.S1_at11/115+26052834..26056236Protein kinase domain containing protein
LOC_Os05g44970OsAffx.15106.2.S1_at11/115+26060098..26064315Protein kinase domain containing protein
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15108.1.S1_at--690--10611Chr05:26076823..26076847 (25 bp)
TTCGGTCGCTGGAACTTTGGCCCGA
LOC_Os05g45000
OsAffx.15108.1.S1_at--715--10731Chr05:26076839..26076863 (25 bp)
TTGGCCCGACTAGTAATACCGAAAT
LOC_Os05g45000
OsAffx.15108.1.S1_at--1030--2971Chr05:26077024..26077048 (25 bp)
AATGGGTGCCTTGGATCAATCCCTT
LOC_Os05g45000
OsAffx.15108.1.S1_at--997--3031Chr05:26077041..26077065 (25 bp)
AATCCCTTCGACTGGACCGTGATAT
LOC_Os05g45000
OsAffx.15108.1.S1_at--168--8111Chr05:26077054..26077078 (25 bp)
GGACCGTGATATCAACGACGACGAT
LOC_Os05g45000
OsAffx.15108.1.S1_at--1040--2991Chr05:26077095..26077119 (25 bp)
AATGACATATTCGAGGCGCCGTCGC
LOC_Os05g45000
OsAffx.15108.1.S1_at--572--3951Chr05:26077144..26077168 (25 bp)
CGCGGAACGCCTCTGGTAACATTGA
LOC_Os05g45000
OsAffx.15108.1.S1_at--963--51Chr05:26077164..26077188 (25 bp)
ATTGAGTTCGCTTGGGATGCCTACA
LOC_Os05g45000
OsAffx.15108.1.S1_at--300--6351Chr05:26077179..26077203 (25 bp)
GATGCCTACACGCAGCCGAAGGATC
LOC_Os05g45000
OsAffx.15108.1.S1_at--1009--4031Chr05:26077324..26077348 (25 bp)
CGTTGTACCTCTATGCTGACTTAAT
LOC_Os05g45000
OsAffx.15108.1.S1_at--415--1051Chr05:26077444..26077468 (25 bp)
AGGTGTTCTCCGTAATGCCCACAAT
LOC_Os05g45000
Target Sequence 
TTCGGTCGCTGGAACTTTGGCCCGACTAGTAATACCGAAATCATCAGGTACCCCGACGATCCACACGACAGAGAATGGGT
GCCTTGGATCAATCCCTTCGACTGGACCGTGATATCAACGACGACGATGGTGCAAAACATAGAAAATGACATATTCGAGG
CGCCGTCGCGGGTGATGCAGACGGCGATTACGCCGCGGAACGCCTCTGGTAACATTGAGTTCGCTTGGGATGCCTACACG
CAGCCGAAGGATCCGACGCCGGGGTACATCGCCAACTTCTACTTCACGGAGGTGCAGCTCCTCCCCAGCAACGCCTTGCG
CCAGTTCTACATCAACCTCAACGGCAGGTTGGTGTATAATGAGAGCTACACGCCGTTGTACCTCTATGCTGACTTAATCT
ACGAGAAAAAACCCTTCCTACGATACCCCGAGTACAACATCTCCATCAACGCCACCTCCAACTCGACGCTGCCACCGATC
ATCAACGCCATCGAGGTGTTCTCCGTAATGCCCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis