Browse Element(s) Details


OsAffx.15125.1.S1_at

Description tigr:9633.m04354
TID=OsAffx.15125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4637011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein
LOC_Os05g46420Os.5372.1.S1_at11/115+26816857..26818265expressed protein
LOC_Os05g46430Os.7054.2.S1_x_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_a_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15125.1.S1_at--1006--1551Chr05:26797685..26797709 (25 bp)
AGCTCGAGGCGCTGGAAACCCTAGG
LOC_Os05g46370
OsAffx.15125.1.S1_at--718--4051Chr05:26797689..26797713 (25 bp)
CGAGGCGCTGGAAACCCTAGGGAAT
LOC_Os05g46370
OsAffx.15125.1.S1_at--121--2611Chr05:26797701..26797725 (25 bp)
AACCCTAGGGAATGGCAATGGCAAC
LOC_Os05g46370
OsAffx.15125.1.S1_at--394--2971Chr05:26797717..26797741 (25 bp)
AATGGCAACGGCAACCTGTTGCACC
LOC_Os05g46370
OsAffx.15125.1.S1_at--213--6671Chr05:26797734..26797758 (25 bp)
GTTGCACCATGGCTACTACACTGGA
LOC_Os05g46370
OsAffx.15125.1.S1_at--438--8491Chr05:26797743..26797767 (25 bp)
TGGCTACTACACTGGATCAAGAAAT
LOC_Os05g46370
OsAffx.15125.1.S1_at--289--1991Chr05:26797777..26797801 (25 bp)
ACTGCTGCTACTGGTTCTAGCAATA
LOC_Os05g46370
OsAffx.15125.1.S1_at--720--1951Chr05:26797786..26797810 (25 bp)
ACTGGTTCTAGCAATAGCACTGTAC
LOC_Os05g46370
OsAffx.15125.1.S1_at--841--291Chr05:26797799..26797823 (25 bp)
ATAGCACTGTACTTGCATTTGGGCG
LOC_Os05g46370
OsAffx.15125.1.S1_at--947--3331Chr05:26797803..26797827 (25 bp)
CACTGTACTTGCATTTGGGCGAGAT
LOC_Os05g46370
OsAffx.15125.1.S1_at--989--9051Chr05:26797812..26797836 (25 bp)
TGCATTTGGGCGAGATGGACTTGCT
LOC_Os05g46370
Target Sequence 
AGCTCGAGGCGCTGGAAACCCTAGGGAATGGCAATGGCAACGGCAACCTGTTGCACCATGGCTACTACACTGGATCAAGA
AATGCTACTGCTACTGCTGCTACTGGTTCTAGCAATAGCACTGTACTTGCATTTGGGCGAGATGGACTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis