Browse Element(s) Details


OsAffx.15207.1.S1_at

Description tigr:9633.m04941
TID=OsAffx.15207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2274011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22680OsAffx.12157.1.S1_at1/115+12800481..12801328retrotransposon protein, putative, unclassified
LOC_Os05g22690OsAffx.2719.1.S1_at2/115+12803008..12803511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22700OsAffx.11392.2.S1_x_at3/115+12803770..12805178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22710OsAffx.32332.1.S1_x_at11/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32333.1.S1_x_at11/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32331.1.S1_x_at7/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32334.1.S1_x_at5/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22730Os.25561.1.S1_at10/115+12818200..12819117one helix protein, putative, expressed
LOC_Os05g22740OsAffx.15207.1.S1_at11/115+12821691..12822482hypothetical protein
LOC_Os05g22750OsAffx.18275.1.S1_x_at2/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22750OsAffx.26607.2.S1_at1/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22760NANA5+12833017..12835427hypothetical protein
LOC_Os05g22770OsAffx.8429.1.S1_at1/115+12836559..12841388retrotransposon protein, putative, unclassified
LOC_Os05g22780OsAffx.4397.1.S1_at11/115+12844942..12845341hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15207.1.S1_at--896--6251Chr05:12821742..12821766 (25 bp)
GATGGTGCATCTGTGAATCAACAAT
LOC_Os05g22740
OsAffx.15207.1.S1_at--1142--2091Chr05:12821798..12821822 (25 bp)
ACATCCTCAGCACCAATTTCAGCGG
LOC_Os05g22740
OsAffx.15207.1.S1_at--942--3951Chr05:12821827..12821983 (25 bp)
CGGTTATCCCGAGGCGTGATCAGGA
LOC_Os05g22740
OsAffx.15207.1.S1_at--16--3491Chr05:12821979..12822003 (25 bp)
CAGGATGATACATTGCGGTCGGATC
LOC_Os05g22740
OsAffx.15207.1.S1_at--892--7791Chr05:12821995..12822019 (25 bp)
GGTCGGATCAGCAAGCTCGGAAGTT
LOC_Os05g22740
OsAffx.15207.1.S1_at--72--4811Chr05:12822009..12822033 (25 bp)
GCTCGGAAGTTCCAACCACAGGTAA
LOC_Os05g22740
OsAffx.15207.1.S1_at--71--1711Chr05:12822131..12822155 (25 bp)
ACCACTGTCACCTGTGCAAAACGAG
LOC_Os05g22740
OsAffx.15207.1.S1_at--960--1491Chr05:12822165..12822378 (25 bp)
AGCACAGGTGCCGAGCTAGCTCATA
LOC_Os05g22740
OsAffx.15207.1.S1_at--388--4851Chr05:12822368..12822392 (25 bp)
GCTAGCTCATAGGATCACACTGGAT
LOC_Os05g22740
OsAffx.15207.1.S1_at--1016--6191Chr05:12822402..12822426 (25 bp)
GAGGCAATCCCTCATGGTGAAAGAT
LOC_Os05g22740
OsAffx.15207.1.S1_at--377--8971Chr05:12822419..12822443 (25 bp)
TGAAAGATCCTTCCTTGTCGCTTTT
LOC_Os05g22740
Target Sequence 
GATGGTGCATCTGTGAATCAACAATTCAATCTAAGAAATCAGCAGGGGCTTGGCCGACATCCTCAGCACCAATTTCAGCG
GCCGCCGGTTATCCCGAGGCGTGATCAGGATGATACATTGCGGTCGGATCAGCAAGCTCGGAAGTTCCAACCACAGGTAA
AGCTAACGGCAATGCAAGGGCAGCAACTGGAGAAACCGCTGGCAGATGGTGGGCAACCACAAACTACTGCGATAATCAAG
GCCAAAAAGCCGAGGCCACCACTGTCACCTGTGCAAAACGAGTGGACACATAGCACAGGTGCCGAGCTAGCTCATAGGAT
CACACTGGATTGGAAGTGGGAGGCAATCCCTCATGGTGAAAGATCCTTCCTTGTCGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis