Browse Element(s) Details

OsAffx.15227.1.S1_s_at

Description

gb:NM_185387.1
DB_XREF= gi:34897859
TID=OsAffx.15227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F17A8; putative protein. (AL049482) (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02090	11/11	hAT family dimerisation domain containing protein
LOC_Os05g35300	11/11	hypothetical protein
LOC_Os11g28740	9/11	hAT family dimerisation domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02028	OsAffx.4692.1.S1_at	11/11	6	+	586544..591158	EYA conserved domain containing protein, expressed
LOC_Os06g02028	Os.12721.1.S1_at	11/11	6	+	586544..591158	EYA conserved domain containing protein, expressed
LOC_Os06g02028	OsAffx.4692.1.S1_x_at	10/11	6	+	586544..591158	EYA conserved domain containing protein, expressed
LOC_Os06g02040	Os.31022.1.S1_at	11/11	6	+	592578..593131	Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054	OsAffx.10373.1.S1_x_at	11/11	6	+	596333..600697	F-box domain containing protein
LOC_Os06g02054	OsAffx.28160.1.S1_at	11/11	6	+	596333..600697	F-box domain containing protein
LOC_Os06g02054	OsAffx.28160.1.S1_x_at	11/11	6	+	596333..600697	F-box domain containing protein
LOC_Os06g02054	OsAffx.10373.1.S1_at	11/11	6	+	596333..600697	F-box domain containing protein
LOC_Os06g02070	OsAffx.10371.1.S1_at	11/11	6	+	605084..606675	retrotransposon protein, putative, unclassified
LOC_Os06g02070	OsAffx.20604.2.S1_at	2/11	6	+	605084..606675	retrotransposon protein, putative, unclassified
LOC_Os06g02080	OsAffx.15226.1.S1_at	8/11	6	+	612912..613862	hypothetical protein
LOC_Os06g02090	OsAffx.15227.1.S1_s_at	11/11	6	+	615415..617865	hAT family dimerisation domain containing protein
LOC_Os06g02090	OsAffx.15227.2.S1_x_at	11/11	6	+	615415..617865	hAT family dimerisation domain containing protein
LOC_Os06g02100	Os.49022.1.S1_at	11/11	6	+	622552..625087	F-box domain containing protein, expressed
LOC_Os06g02110	Os.34056.1.S1_at	11/11	6	+	625262..627762	F-box domain containing protein, expressed
LOC_Os06g02110	Os.55536.1.S1_at	1/11	6	+	625262..627762	F-box domain containing protein, expressed
LOC_Os06g02120	Os.21199.1.S1_s_at	11/11	6	+	628710..632784	pentatricopeptide, putative, expressed
LOC_Os06g02130	Os.15324.1.S1_at	11/11	6	+	633263..639451	G-protein alpha subunit, putative, expressed
LOC_Os06g02144	Os.7894.1.S1_at	11/11	6	+	642711..645726	6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15227.1.S1_s_at--162--73	4	Chr11:16139998..16140022 (25 bp)	ATGATTTGGTGTATTTGCTTCTTAA	LOC_Os11g28740
OsAffx.15227.1.S1_s_at--26--653	5	Chr11:16140000..16140024 (25 bp)	GATTTGGTGTATTTGCTTCTTAAAT	LOC_Os11g28740
OsAffx.15227.1.S1_s_at--710--773	6	Chr11:16140005..16140029 (25 bp)	GGTGTATTTGCTTCTTAAATTGGTG	LOC_Os11g28740
OsAffx.15227.1.S1_s_at--1105--1071	4	Chr11:16140012..16140036 (25 bp)	TTGCTTCTTAAATTGGTGTTGATCC	LOC_Os11g28740
OsAffx.15227.1.S1_s_at--367--491	3	Chr11:16140014..16140038 (25 bp)	GCTTCTTAAATTGGTGTTGATCCTA	LOC_Os11g28740
OsAffx.15227.1.S1_s_at--152--343	3	Chr11:16140018..16140042 (25 bp)	CTTAAATTGGTGTTGATCCTACCGG	LOC_Os11g28740
OsAffx.15227.1.S1_s_at--1034--979	3	Chr11:16140020..16140044 (25 bp)	TAAATTGGTGTTGATCCTACCGGTG	LOC_Os11g28740
OsAffx.15227.1.S1_s_at--1019--311	3	Chr11:16140022..16140045 (24 bp)	AATTGGTGTTGATCCTACCGGTGGC	LOC_Os11g28740
OsAffx.15227.1.S1_s_at--1150--861	2	Chr06:617708..617732 (25 bp)	TGGTGTTGATCCTACCGGTGGCGAC	LOC_Os06g02090
OsAffx.15227.1.S1_s_at--152--665	2	Chr06:617712..617736 (25 bp)	GTTGATCCTACCGGTGGCGACGGCA	LOC_Os06g02090
OsAffx.15227.1.S1_s_at--237--739	3	Chr11:16140099..16140123 (25 bp)	GTGAGAAATAGTATGAGTGACAAGT	LOC_Os11g28740

Target Sequence

ATGATTTGGTGTATTTGCTTCTTAAATTGGTGTTGATCCTACCGGTGGCGACGGCAAGTGTGGAAAGAGTATTTTCTGCA
ATGAATTTAGTGAAGACTAAAGTGAGAAATAGTATGAGTGACAAGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis