Browse Element(s) Details


OsAffx.15239.1.S1_at

Description tigr:9634.m00199
TID=OsAffx.15239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0293011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02870OsAffx.15237.1.S1_at11/116+1052171..1055079hypothetical protein
LOC_Os06g02880OsAffx.29663.1.S1_at8/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.380.1.S1_at4/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880Os.27345.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.13325.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02900Os.14214.1.S1_at11/116+1062537..1065533Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02910NANA6+1070114..1070593retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02920NANA6+1073319..1074518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02930OsAffx.15239.1.S1_at11/116+1077073..1078054expressed protein
LOC_Os06g02930Os.7163.1.S1_at11/116+1077073..1078054expressed protein
LOC_Os06g02940Os.20086.1.S1_at11/116+1078930..1079932expressed protein
LOC_Os06g02949NANA6+1087381..1088185NA
LOC_Os06g02960Os.52298.1.S1_at11/116+1089059..1091611expressed protein
LOC_Os06g02970NANA6+1092764..1093351retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02980OsAffx.30475.9.S1_s_at11/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980OsAffx.30475.1.S1_s_at8/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980OsAffx.30475.5.S1_x_at4/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02990NANA6+1098388..1099181hypothetical protein
LOC_Os06g03000NANA6+1100366..1101751retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15239.1.S1_at--1068--4251Chr06:1077880..1077904 (25 bp)
CCGGACGCGCTGGTCATGAAGGTCA
LOC_Os06g02930
OsAffx.15239.1.S1_at--254--9611Chr06:1077867..1077891 (25 bp)
TCATGAAGGTCATCCACGGCTCCAT
LOC_Os06g02930
OsAffx.15239.1.S1_at--1147--8311Chr06:1077850..1077874 (25 bp)
GGCTCCATGTTGGTAAACCTGCCGC
LOC_Os06g02930
OsAffx.15239.1.S1_at--648--10751Chr06:1077817..1077841 (25 bp)
TTGACGTTCACGTTCCAGCTGGAGG
LOC_Os06g02930
OsAffx.15239.1.S1_at--339--1611Chr06:1077801..1077825 (25 bp)
AGCTGGAGGTCGACAACCCAAGCGG
LOC_Os06g02930
OsAffx.15239.1.S1_at--103--5651Chr06:1077772..1077796 (25 bp)
GACACCATGAGCTTCACCGACATGT
LOC_Os06g02930
OsAffx.15239.1.S1_at--229--8851Chr06:1077708..1077732 (25 bp)
TGATCAGCATGGCTAACCTCTTCTA
LOC_Os06g02930
OsAffx.15239.1.S1_at--1065--5791Chr06:1077632..1077656 (25 bp)
GACGCAGTGGACGACCAACCCGGAG
LOC_Os06g02930
OsAffx.15239.1.S1_at--776--4591Chr06:1077597..1077621 (25 bp)
GCGACTACTTCGTGAGGAGGCTATC
LOC_Os06g02930
OsAffx.15239.1.S1_at--568--1011Chr06:1077520..1077544 (25 bp)
AGGTTGGACACCCTCAACGGCGACG
LOC_Os06g02930
OsAffx.15239.1.S1_at--943--9351Chr06:1077435..1077459 (25 bp)
TCGACAAGTCCTTGAACTCCACCGA
LOC_Os06g02930
Target Sequence 
CCGGACGCGCTGGTCATGAAGGTCATCCACGGCTCCATGTTGGTAAACCTGCCGCCGCCGAGCTTGACGTTCACGTTCCA
GCTGGAGGTCGACAACCCAAGCGGGCGCGACACCATGAGCTTCACCGACATGTCCGTCGCCGTCTTGGCCGTCTCCGTCT
CCGGCGGCGGCGTGATCAGCATGGCTAACCTCTTCTACTTGCCCAACATCACGGACTTGCAGCCGGGGAAGATGATGCAG
GTGGTGACGACGCAGTGGACGACCAACCCGGAGGCGGAGGTCGGCGACTACTTCGTGAGGAGGCTATCCCGTGGGGAAAC
CATGGCCGTCACCCTGCGAGTCCAGGGCATCCTCATCACCAGGTTGGACACCCTCAACGGCGACGGGCCGGTCCACACCA
GCAAGGCCAACGTCACCTACACTTGCTTCAACGTTAAACTCGGCGTCGACAAGTCCTTGAACTCCACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis