Browse Element(s) Details


OsAffx.15281.1.S1_at

Description tigr:9634.m00527
TID=OsAffx.15281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF387793 thiol methyltransferase 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g060409/11thiol methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05990OsAffx.10929.1.S1_x_at1/116+2748784..2753800expressed protein
LOC_Os06g06000OsAffx.4737.1.S1_at11/116+2758259..2761128hypothetical protein
LOC_Os06g06014Os.10264.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014OsAffx.15280.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014Os.10264.2.S1_at10/116+2765148..2769430expressed protein
LOC_Os06g06030Os.10995.1.S1_at11/116+2770074..2773038Proteasome subunit beta type 5 precursor, putative, expressed
LOC_Os06g06040Os.46439.1.S1_at11/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06040Os.21058.1.S1_s_at11/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06040OsAffx.15281.1.S1_at9/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06050Os.18946.2.S1_at11/116+2779789..2784227F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050Os.18946.1.S1_at11/116+2779789..2784227F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060NANA6+2785775..2789141retrotransposon protein, putative, unclassified
LOC_Os06g06070NANA6+2790043..2792657retrotransposon protein, putative, unclassified
LOC_Os06g06080Os.10381.1.S1_at11/116+2802043..2805272serine esterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15281.1.S1_at--326--1811Chr06:2775182..2775206 (25 bp)
ACCCTTATATATTTGGTAACTGAAG
LOC_Os06g06040
OsAffx.15281.1.S1_at--762--191Chr06:2775172..2775196 (25 bp)
ATTTGGTAACTGAAGAATCTATCTA
LOC_Os06g06040
OsAffx.15281.1.S1_at--255--3071Chr06:2775157..2775181 (25 bp)
AATCTATCTATTCTTTTGTTTACTT
LOC_Os06g06040
OsAffx.15281.1.S1_at--644--9551Chr06:2775146..2775170 (25 bp)
TCTTTTGTTTACTTTTCCATTGAGG
LOC_Os06g06040
OsAffx.15281.1.S1_at--681--10471Chr06:2775138..2775162 (25 bp)
TTACTTTTCCATTGAGGATGTCATG
LOC_Os06g06040
OsAffx.15281.1.S1_at--624--7991Chr06:2775123..2775147 (25 bp)
GGATGTCATGGTACTAATCATATCA
LOC_Os06g06040
OsAffx.15281.1.S1_at--1130--10151NONE
TATCATATTGTGCTGAGAGAATCTC
NONE
OsAffx.15281.1.S1_at--206--9551Chr06:2774402..2774426 (25 bp)
TCTTATTACAGATCAGTGACCAAGA
LOC_Os06g06040
OsAffx.15281.1.S1_at--461--3091Chr06:2774249..2774382 (25 bp)
AATACAGTCACCGATACTCTTGCGT
LOC_Os06g06040
OsAffx.15281.1.S1_at--48--9911Chr06:2774235..2774259 (25 bp)
TACTCTTGCGTTGTCCTTTCCGCAA
LOC_Os06g06040
OsAffx.15281.1.S1_at--369--3291NONE
CAAACCGCGCAAGGCGATTTCAGCA
NONE
Target Sequence 
ACCCTTATATATTTGGTAACTGAAGAATCTATCTATTCTTTTGTTTACTTTTCCATTGAGGATGTCATGGTACTAATCAT
ATCATATTGTGCTGAGAGAATCTCTTATTACAGATCAGTGACCAAGAAGGAGGACCACCATTCAATAATACAGTCACCGA
TACTCTTGCGTTGTCCTTTCCGCAACCACAGCTATCAGAAGGTTCTAGAACCATTGGGTTTCAAGGCTATTCTCATGGAA
GACAATGAACTAGCTATCAAACCGCGCAAGGCGATTTCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis