Browse Element(s) Details

OsAffx.15291.1.S1_at

Description

tigr:9634.m00619
TID=OsAffx.15291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06870	9/11	MIZ zinc finger family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06830	NA	NA	6	+	3221905..3227837	retrotransposon protein, putative, unclassified
LOC_Os06g06840	Os.31312.2.S1_x_at	3/11	6	+	3228465..3231713	transposon protein, putative, unclassified
LOC_Os06g06840	Os.31312.5.S1_x_at	2/11	6	+	3228465..3231713	transposon protein, putative, unclassified
LOC_Os06g06850	Os.54240.1.S1_at	2/11	6	+	3234340..3238083	NB-ARC domain containing protein
LOC_Os06g06860	Os.54240.1.S1_at	11/11	6	+	3240834..3245313	NB-ARC domain containing protein, expressed
LOC_Os06g06870	OsAffx.15291.1.S1_s_at	11/11	6	+	3249505..3260365	MIZ zinc finger family protein, expressed
LOC_Os06g06870	Os.12448.1.S1_at	10/11	6	+	3249505..3260365	MIZ zinc finger family protein, expressed
LOC_Os06g06870	OsAffx.15291.1.S1_at	9/11	6	+	3249505..3260365	MIZ zinc finger family protein, expressed
LOC_Os06g06870	Os.56258.1.S1_at	1/11	6	+	3249505..3260365	MIZ zinc finger family protein, expressed
LOC_Os06g06880	Os.19570.1.S1_at	11/11	6	+	3263020..3266305	Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06880	Os.50260.2.A1_x_at	1/11	6	+	3263020..3266305	Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06890	OsAffx.15292.1.S1_at	11/11	6	+	3269078..3269750	hypothetical protein
LOC_Os06g06890	OsAffx.26473.1.S1_at	1/11	6	+	3269078..3269750	hypothetical protein
LOC_Os06g06900	OsAffx.27480.1.S1_at	11/11	6	+	3272407..3274876	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06900	Os.23257.1.A1_at	1/11	6	+	3272407..3274876	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06910	OsAffx.27481.1.S1_at	11/11	6	+	3276864..3277976	expressed protein
LOC_Os06g06920	NA	NA	6	+	3280883..3284653	D-mannose binding lectin family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15291.1.S1_at--976--343	1	NONE	CATTTTGAAGAAGAGGGCTCCATTT	NONE
OsAffx.15291.1.S1_at--777--1035	1	NONE	TTTTGAAGAAGAGGGCTCCATTTTT	NONE
OsAffx.15291.1.S1_at--403--1037	1	Chr06:3258609..3258687 (25 bp)	TTTTTTAGTGAAGCCAGGTGTATCT	LOC_Os06g06870
OsAffx.15291.1.S1_at--394--1007	1	Chr06:3258604..3258682 (25 bp)	TAGTGAAGCCAGGTGTATCTGGTAG	LOC_Os06g06870
OsAffx.15291.1.S1_at--1154--243	1	Chr06:3258362..3258386 (25 bp)	AAAATGAGGCATGGCAAGGCCGTGA	LOC_Os06g06870
OsAffx.15291.1.S1_at--924--67	1	Chr06:3258352..3258376 (25 bp)	ATGGCAAGGCCGTGAGGGCTAAAAT	LOC_Os06g06870
OsAffx.15291.1.S1_at--1159--517	1	Chr06:3258349..3258373 (25 bp)	GCAAGGCCGTGAGGGCTAAAATCCT	LOC_Os06g06870
OsAffx.15291.1.S1_at--905--841	1	Chr06:3258345..3258369 (25 bp)	GGCCGTGAGGGCTAAAATCCTTATC	LOC_Os06g06870
OsAffx.15291.1.S1_at--586--613	1	Chr06:3258339..3258363 (25 bp)	GAGGGCTAAAATCCTTATCATTCGA	LOC_Os06g06870
OsAffx.15291.1.S1_at--74--759	1	Chr06:3258337..3258361 (25 bp)	GGGCTAAAATCCTTATCATTCGAGA	LOC_Os06g06870
OsAffx.15291.1.S1_at--1105--981	1	Chr06:3258333..3258357 (25 bp)	TAAAATCCTTATCATTCGAGATTGC	LOC_Os06g06870

Target Sequence

CATTTTGAAGAAGAGGGCTCCATTTTTTTTAGTGAAGCCAGGTGTATCTGGTAGGAAAAGATCAATTTCTGCAATCTTCT
GTTATGGTGCTAATGATATCATGCAAGTGGCGGGGGACGGACAAAAAATGAGGCATGGCAAGGCCGTGAGGGCTAAAATC
CTTATCATTCGAGATTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis