Browse Element(s) Details


OsAffx.15291.1.S1_s_at

Description tigr:9634.m00619
TID=OsAffx.15291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0687011/11MIZ zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06830NANA6+3221905..3227837retrotransposon protein, putative, unclassified
LOC_Os06g06840Os.31312.2.S1_x_at3/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06840Os.31312.5.S1_x_at2/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06850Os.54240.1.S1_at2/116+3234340..3238083NB-ARC domain containing protein
LOC_Os06g06860Os.54240.1.S1_at11/116+3240834..3245313NB-ARC domain containing protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_s_at11/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.12448.1.S1_at10/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_at9/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.56258.1.S1_at1/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06880Os.19570.1.S1_at11/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06880Os.50260.2.A1_x_at1/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06890OsAffx.15292.1.S1_at11/116+3269078..3269750hypothetical protein
LOC_Os06g06890OsAffx.26473.1.S1_at1/116+3269078..3269750hypothetical protein
LOC_Os06g06900OsAffx.27480.1.S1_at11/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06900Os.23257.1.A1_at1/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06910OsAffx.27481.1.S1_at11/116+3276864..3277976expressed protein
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15291.1.S1_s_at--601--9951Chr06:3259868..3260032 (25 bp)
TACGCCTTCGCCAGAGGGATCGATT
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--876--6131Chr06:3259855..3259879 (25 bp)
GAGGGATCGATTTCGCTCTTTCTAG
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--408--6531Chr06:3259847..3259871 (25 bp)
GATTTCGCTCTTTCTAGCGGCGATG
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--453--9331Chr06:3259843..3259867 (25 bp)
TCGCTCTTTCTAGCGGCGATGTTCC
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--633--6271Chr06:3259826..3259850 (25 bp)
GATGTTCCTACCGTGGCCAGTGAAA
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--38--7551Chr06:3259814..3259838 (25 bp)
GTGGCCAGTGAAATACCCAGCATTT
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--270--7351Chr06:3259807..3259831 (25 bp)
GTGAAATACCCAGCATTTTGAAGAA
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--2--6471Chr06:3258574..3258598 (25 bp)
GATCAATTTCTGCAATCTTCTGTTA
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--924--191Chr06:3258569..3258593 (25 bp)
ATTTCTGCAATCTTCTGTTATGGTG
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--702--3191Chr06:3258562..3258586 (25 bp)
CAATCTTCTGTTATGGTGCTAATGA
LOC_Os06g06870
OsAffx.15291.1.S1_s_at--563--10111Chr06:3258551..3258575 (25 bp)
TATGGTGCTAATGATATCATGCAAG
LOC_Os06g06870
Target Sequence 
TACGCCTTCGCCAGAGGGATCGATTTCGCTCTTTCTAGCGGCGATGTTCCTACCGTGGCCAGTGAAATACCCAGCATTTT
GAAGAAGAGGGCTCCATTTTTTTTAGTGAAGCCAGGTGTATCTGGTAGGAAAAGATCAATTTCTGCAATCTTCTGTTATG
GTGCTAATGATATCATGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15291.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis