Browse Element(s) Details


OsAffx.15328.1.S1_at

Description tigr:9634.m00864
TID=OsAffx.15328.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0911011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09060Os.29067.2.S1_at4/116+4557431..4562454retrotransposon protein, putative, unclassified
LOC_Os06g09069NANA6+4564943..4565300NA
LOC_Os06g09080Os.46459.1.S1_at1/116+4567260..4568265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09090Os.27742.2.S1_a_at11/116+4570099..4573905Ligand-gated ion channel family protein, expressed
LOC_Os06g09090OsAffx.4776.1.S1_s_at1/116+4570099..4573905Ligand-gated ion channel family protein, expressed
LOC_Os06g09100OsAffx.15327.1.S1_at10/116+4576644..4577866hypothetical protein
LOC_Os06g09110OsAffx.15328.1.S1_at11/116+4582309..4584737hypothetical protein
LOC_Os06g09110OsAffx.27792.1.S1_at1/116+4582309..4584737hypothetical protein
LOC_Os06g09110Os.23021.1.S1_at1/116+4582309..4584737hypothetical protein
LOC_Os06g09120OsAffx.4776.1.S1_s_at11/116+4586798..4590084Ligand-gated ion channel family protein, expressed
LOC_Os06g09130Os.54329.1.S1_at11/116+4592917..4596946Ligand-gated ion channel family protein, expressed
LOC_Os06g09140NANA6+4603421..4604035hypothetical protein
LOC_Os06g09150NANA6+4604515..4605856transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09160OsAffx.30261.2.S1_s_at11/116+4606807..4607109hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15328.1.S1_at--181--4091Chr06:4582410..4582434 (25 bp)
CGACGAGGCCGGTCGTAGTAGATCC
LOC_Os06g09110
OsAffx.15328.1.S1_at--876--3631Chr06:4582440..4582464 (25 bp)
CTTCGCGGCCAAATCGGGCAAGGGC
LOC_Os06g09110
OsAffx.15328.1.S1_at--787--2611Chr06:4582528..4582552 (25 bp)
AACCTCCCGCGGCTAGAATGGGATG
LOC_Os06g09110
OsAffx.15328.1.S1_at--231--7731Chr06:4582916..4582940 (25 bp)
GGTGGCAAAGCCAGCTCGGCTAGAA
LOC_Os06g09110
OsAffx.15328.1.S1_at--1066--5371Chr06:4582938..4582962 (25 bp)
GAAGCAGAAGGCGACCCCATCGGGT
LOC_Os06g09110
OsAffx.15328.1.S1_at--178--10711Chr06:4582962..4582986 (25 bp)
TTGCGCTCACGGCAGGAGATGCAAC
LOC_Os06g09110
OsAffx.15328.1.S1_at--1158--651Chr06:4582980..4583004 (25 bp)
ATGCAACGGGTACTAGCTGCGCCAA
LOC_Os06g09110
OsAffx.15328.1.S1_at--43--8512Chr07:17542827..17542959 (24 bp)
TGGCAAAAAGTCTCTTCTGCCTCCT
NONE
OsAffx.15328.1.S1_at--849--7831Chr06:4584036..4584060 (25 bp)
GGTAAATCCCCTAGTTATGTTGAGA
LOC_Os06g09110
OsAffx.15328.1.S1_at--1133--291Chr06:4584076..4584100 (25 bp)
ATAGCCCATTCTCCGAGGCGCGAGA
LOC_Os06g09110
OsAffx.15328.1.S1_at--504--4291Chr06:4584114..4584138 (25 bp)
CCTCGGCTTACCATCTTAAGACGTA
LOC_Os06g09110
Target Sequence 
CGACGAGGCCGGTCGTAGTAGATCCGGCCCCTTCGCGGCCAAATCGGGCAAGGGCGGCACCGGCAGTGCCACTTCTGGCT
CGAGGAGGAGGCCGTGGTGGATCTGGGGAGGTGAGTCCAACCTCCCGCGGCTAGAATGGGATGAGATTGACAGCACGGTG
GCAAAGCCAGCTCGGCTAGAAGCAGAAGGCGACCCCATCGGGTTGCGCTCACGGCAGGAGATGCAACGGGTACTAGCTGC
GCCAACGGTATGGGGCAACAAGGATTGGGGGCGAAGAGAGATACTTTTTGAGTTGGCAAAAAGTCTCTTCTGCCTCCTCC
GTCCAGGTAAATCCCCTAGTTATGTTGAGAAGCTTGAAGAGAGGGATAGCCCATTCTCCGAGGCGCGAGATGACCTGGGC
TCCCCTCGGCTTACCATCTTAAGACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis