Browse Element(s) Details


OsAffx.15386.1.S1_at

Description tigr:9634.m01216
TID=OsAffx.15386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F19K23.18 gene product
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1236011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12320Os.11771.1.S1_at11/116+6677246..6679863Transmembrane amino acid transporter protein, expressed
LOC_Os06g12330Os.54785.1.S1_at11/116+6681438..6684948amino acid carrier, putative, expressed
LOC_Os06g12340OsAffx.15385.1.S1_at11/116+6685570..6686307hypothetical protein
LOC_Os06g12350Os.54811.1.S1_at11/116+6690065..6694064Transmembrane amino acid transporter protein, expressed
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12380OsAffx.18105.2.A1_at11/116+6711479..6712222hypothetical protein
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15386.1.S1_at--894--7151Chr06:6698988..6699012 (25 bp)
GTCTACTCTACTGTCATGCAAAGCA
LOC_Os06g12360
OsAffx.15386.1.S1_at--527--2211Chr06:6699143..6699164 (22 bp)
ACAAGACGAGCTTGGTGTCATCTTT
LOC_Os06g12360
OsAffx.15386.1.S1_at--920--5311Chr06:6699230..6699254 (25 bp)
GAAGGGATTGCCACTGCTCTATTAC
LOC_Os06g12360
OsAffx.15386.1.S1_at--812--3951Chr06:6699266..6699290 (25 bp)
CGGAGCAGCCTCCAAGATCATGAGA
LOC_Os06g12360
OsAffx.15386.1.S1_at--253--1171Chr06:6699340..6699364 (25 bp)
AGTACTTCTACATGCCGATCACGCA
LOC_Os06g12360
OsAffx.15386.1.S1_at--632--3351Chr06:6699359..6699383 (25 bp)
CACGCAGGCGGCACGAGAGCTGAAT
LOC_Os06g12360
OsAffx.15386.1.S1_at--446--1371Chr06:6699374..6699398 (25 bp)
AGAGCTGAATGTTGGGCTCACCCTC
LOC_Os06g12360
OsAffx.15386.1.S1_at--1028--1611Chr06:6699418..6699442 (25 bp)
AGCTGGGCATTCCAAGGTGGCCACA
LOC_Os06g12360
OsAffx.15386.1.S1_at--587--7551Chr06:6699434..6699458 (25 bp)
GTGGCCACACCGCAAGATGAAAAGC
LOC_Os06g12360
OsAffx.15386.1.S1_at--877--6991Chr06:6699583..6699604 (22 bp)
GTACAGGTCCTTCAGGAAGCCAGCA
LOC_Os06g12360
OsAffx.15386.1.S1_at--347--1451Chr06:6699674..6699698 (25 bp)
AGAAGCCGTATGTTCAGCTCGAGGA
LOC_Os06g12360
Target Sequence 
GTCTACTCTACTGTCATGCAAAGCAACGTTTTACAAGACGAGCTTGGTGTCATCTTTGAAGATGATGTGCTGAAGTATTG
GGATGAGATGGAGCAATCGGAGAACAAGGTAGAGAAAAGTGAGAAGGGATTGCCACTGCTCTATTACGGTGATGAGAACG
GAGCAGCCTCCAAGATCATGAGAGACGATGTTAGATCAGAGGAGAAGGCATTGACGTTCGAGCTCGTGTCCCAGTACTTC
TACATGCCGATCACGCAGGCGGCACGAGAGCTGAATGTTGGGCTCACCCTCCTGAAGAAGAAGTGCAGAGAGCTGGGCAT
TCCAAGGTGGCCACACCGCAAGATGAAAAGCTTGCAGACACTCATCAACAATGTACAGGTCCTTCAGGAAGCCAGCAAGG
CGAACAATGAGGAGCAGCTGAGGATGCTGGTAGAGATGCTGCAGGAGGAGAGGAGGCTCCTGGAGCAGAAGCCGTATGTT
CAGCTCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis