Browse Element(s) Details


OsAffx.15405.1.S1_at

Description tigr:9634.m01322
TID=OsAffx.15405.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-adenosyl-L-methionine:salicylic acid methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1331011/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13250OsAffx.27607.1.S1_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13250OsAffx.27607.2.S1_s_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13260OsAffx.15404.1.S1_at11/116+7294292..7295555hypothetical protein
LOC_Os06g13270NANA6+7297666..7301171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13280OsAffx.27608.1.S1_at11/116+7305307..7306548O-methyltransferase ZRP4, putative
LOC_Os06g13290NANA6+7310746..7312078retrotransposon protein, putative, unclassified
LOC_Os06g13300OsAffx.4826.1.S1_at11/116+7314027..7316138hypothetical protein
LOC_Os06g13310OsAffx.15405.1.S1_at11/116+7317600..7322202SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13320Os.52735.1.S1_at11/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13320OsAffx.24030.1.S1_x_at4/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13330Os.24485.1.A1_at2/116+7332279..7334742hypothetical protein
LOC_Os06g13340OsAffx.27609.1.S1_at10/116+7337077..7338728hypothetical protein
LOC_Os06g13350OsAffx.15406.1.S1_at11/116+7341145..7343868SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13360NANA6+7344324..7348355retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15405.1.S1_at--81--1851Chr06:7318130..7318154 (25 bp)
ACGCATGGTGTTAATATTTCTCGGA
LOC_Os06g13310
OsAffx.15405.1.S1_at--313--11Chr06:7318047..7318071 (25 bp)
AGGCGTTAGAATCACTTGTTGGGAA
LOC_Os06g13310
OsAffx.15405.1.S1_at--101--4311Chr06:7317895..7317919 (25 bp)
CCTATGGGCCATCAGTTGACAAAGT
LOC_Os06g13310
OsAffx.15405.1.S1_at--581--6711Chr06:7317843..7317867 (25 bp)
GTTCGACTTGGATCACATCAAACTC
LOC_Os06g13310
OsAffx.15405.1.S1_at--772--6351Chr06:7317803..7317827 (25 bp)
GATCCTTACGACGATTCAGAAGGTG
LOC_Os06g13310
OsAffx.15405.1.S1_at--568--7391Chr06:7317781..7317805 (25 bp)
GTGATGTTGTTCTTGACGGTGCCAA
LOC_Os06g13310
OsAffx.15405.1.S1_at--187--1931Chr06:7317766..7317790 (25 bp)
ACGGTGCCAACAGCAGCCTGAATAT
LOC_Os06g13310
OsAffx.15405.1.S1_at--547--3451Chr06:7317741..7317765 (25 bp)
CAGTAATCTCATTAGGTCAGTCCTG
LOC_Os06g13310
OsAffx.15405.1.S1_at--823--7111Chr06:7317726..7317750 (25 bp)
GTCAGTCCTGGAGTCCTTGATAGCA
LOC_Os06g13310
OsAffx.15405.1.S1_at--965--2491Chr06:7317686..7317710 (25 bp)
AACATACTCGATGCGTTGTTTCAAG
LOC_Os06g13310
OsAffx.15405.1.S1_at--411--691Chr06:7317661..7317685 (25 bp)
AGTTTAGGTCCCTTGTGGCCCAGCA
LOC_Os06g13310
Target Sequence 
ACGCATGGTGTTAATATTTCTCGGAAGGAAGGATGAGGATGTATATAAAGGAGATCTCAATCATATGTATGGATTTGTCA
CAAAGGCGTTAGAATCACTTGTTGGGAAGGGCCTGCTGAGCAAGGAAAAGTTGGAATCCTTCAACCTACCTACCTATGGG
CCATCAGTTGACAAAGTGAAGGAAATTGTTACGAAAAGCCATATGTTCGACTTGGATCACATCAAACTCTTTGAGGCAAA
CTGGGATCCTTACGACGATTCAGAAGGTGATGTTGTTCTTGACGGTGCCAACAGCAGCCTGAATATCAGTAATCTCATTA
GGTCAGTCCTGGAGTCCTTGATAGCAAGCCATTTTGGAGGAAACATACTCGATGCGTTGTTTCAAGAGTTTAGGTCCCTT
GTGGCCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis