Browse Element(s) Details


OsAffx.15465.1.S1_at

Description tigr:9634.m01712
TID=OsAffx.15465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to thaumatin-like protein precursor. (rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1699011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16960OsAffx.27680.1.S1_at10/116+9831188..9833592O-methyltransferase family protein
LOC_Os06g16970OsAffx.4855.1.S1_at11/116+9836651..9837052hypothetical protein
LOC_Os06g16980Os.20056.1.A1_at11/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980OsAffx.24454.2.S1_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980Os.7779.1.S2_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16990OsAffx.15465.1.S1_at11/116+9856524..9857170hypothetical protein
LOC_Os06g17000Os.51972.1.S1_at11/116+9860879..9862939BURP domain containing protein, expressed
LOC_Os06g17000OsAffx.4876.1.S1_x_at1/116+9860879..9862939BURP domain containing protein, expressed
LOC_Os06g17020OsAffx.15467.1.S1_at3/116+9869712..9871353UDP-glycosyltransferase 89B2, putative, expressed
LOC_Os06g17030OsAffx.27348.1.S1_x_at1/116+9875078..9878342transposon protein, putative, unclassified, expressed
LOC_Os06g17040NANA6+9878981..9885328retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15465.1.S1_at--917--8111Chr06:9857111..9857135 (25 bp)
GGACTTTTACGACCTGTCAGTGATT
LOC_Os06g16990
OsAffx.15465.1.S1_at--508--4271Chr06:9857099..9857123 (25 bp)
CCTGTCAGTGATTGACGGGTACAAT
LOC_Os06g16990
OsAffx.15465.1.S1_at--712--1511Chr06:9857053..9857077 (25 bp)
AGCAGCGGCGCTGGGCTCACTTGCA
LOC_Os06g16990
OsAffx.15465.1.S1_at--35--7591Chr06:9857041..9857065 (25 bp)
GGGCTCACTTGCAGGGACAACAGAT
LOC_Os06g16990
OsAffx.15465.1.S1_at--316--3631Chr06:9857034..9857058 (25 bp)
CTTGCAGGGACAACAGATGCCGAGG
LOC_Os06g16990
OsAffx.15465.1.S1_at--360--4531Chr06:9856957..9856981 (25 bp)
GCCGCCACGCCGAGGTTGGAGTCTT
LOC_Os06g16990
OsAffx.15465.1.S1_at--1148--4051Chr06:9856947..9856971 (25 bp)
CGAGGTTGGAGTCTTCCTTCCTCCT
LOC_Os06g16990
OsAffx.15465.1.S1_at--628--9691Chr06:9856915..9856939 (25 bp)
TCACTCCTCTTGTCTAGACAGGCTG
LOC_Os06g16990
OsAffx.15465.1.S1_at--1136--3611Chr06:9856907..9856931 (25 bp)
CTTGTCTAGACAGGCTGGCCGACAG
LOC_Os06g16990
OsAffx.15465.1.S1_at--979--971Chr06:9856876..9856900 (25 bp)
AGGAGGCCGGCTTCTATAAGAAATA
LOC_Os06g16990
OsAffx.15465.1.S1_at--506--6091Chr06:9856848..9856872 (25 bp)
GAGTAATATGTACCACTCCAAATTA
LOC_Os06g16990
Target Sequence 
GGACTTTTACGACCTGTCAGTGATTGACGGGTACAATGTCGCCATGAGCTTCTCCTGCAGCAGCGGCGCTGGGCTCACTT
GCAGGGACAACAGATGCCGAGGCGGGAGAGGAGGAATCGGCGGCAGCTACGATGGCCGCGATGCGGGAAAGGAGGCCGCC
ACGCCGAGGTTGGAGTCTTCCTTCCTCCTCTGTCTCTCACTCCTCTTGTCTAGACAGGCTGGCCGACAGGTGGGGAGGAG
GCCGGCTTCTATAAGAAATATGAGAGTAATATGTACCACTCCAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis