Browse Element(s) Details

OsAffx.15477.1.S1_at

Description

tigr:9634.m01776
TID=OsAffx.15477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g17890	8/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g17840	Os.9100.1.S2_at	11/11	6	+	10343191..10357302	HEAT repeat family protein, expressed
LOC_Os06g17840	Os.9100.1.S1_at	11/11	6	+	10343191..10357302	HEAT repeat family protein, expressed
LOC_Os06g17840	Os.9100.1.S3_at	11/11	6	+	10343191..10357302	HEAT repeat family protein, expressed
LOC_Os06g17850	NA	NA	6	+	10360910..10363598	hypothetical protein
LOC_Os06g17860	OsAffx.27688.1.S1_at	11/11	6	+	10364751..10367451	hypothetical protein
LOC_Os06g17870	OsAffx.27689.1.S1_s_at	11/11	6	+	10371361..10373625	nitrate-induced NOI protein, putative
LOC_Os06g17870	OsAffx.27689.1.S1_at	9/11	6	+	10371361..10373625	nitrate-induced NOI protein, putative
LOC_Os06g17880	Os.50486.1.S1_at	11/11	6	+	10374847..10379262	NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g17890	OsAffx.15477.1.S1_at	8/11	6	+	10381005..10382012	hypothetical protein
LOC_Os06g17900	OsAffx.15478.1.S1_at	2/11	6	+	10386510..10389466	NB-ARC domain containing protein
LOC_Os06g17910	OsAffx.15478.3.S1_at	11/11	6	+	10396098..10398254	NBS-LRR disease resistance protein, putative
LOC_Os06g17920	OsAffx.15478.1.S1_at	10/11	6	+	10404660..10414296	NB-ARC domain containing protein
LOC_Os06g17920	Os.50906.1.S1_at	2/11	6	+	10404660..10414296	NB-ARC domain containing protein
LOC_Os06g17920	OsAffx.8356.1.S1_x_at	2/11	6	+	10404660..10414296	NB-ARC domain containing protein
LOC_Os06g17920	OsAffx.24024.1.S1_at	1/11	6	+	10404660..10414296	NB-ARC domain containing protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15477.1.S1_at--745--377	1	Chr06:10381067..10381091 (25 bp)	CTCTGCCGCTGCCAATGAGACGAGC	LOC_Os06g17890
OsAffx.15477.1.S1_at--771--917	1	Chr06:10381070..10381094 (25 bp)	TGCCGCTGCCAATGAGACGAGCCTC	LOC_Os06g17890
OsAffx.15477.1.S1_at--332--479	1	Chr06:10381074..10381098 (25 bp)	GCTGCCAATGAGACGAGCCTCCTGC	LOC_Os06g17890
OsAffx.15477.1.S1_at--605--439	1	Chr06:10381077..10381101 (25 bp)	GCCAATGAGACGAGCCTCCTGCTCG	LOC_Os06g17890
OsAffx.15477.1.S1_at--595--835	1	Chr06:10381101..10381120 (20 bp)	GGCGTCGAGAAGGACATCTGCTCCT	LOC_Os06g17890
OsAffx.15477.1.S1_at--1153--721	1	NONE	GTCGAGAAGGACATCTGCTCCTACG	NONE
OsAffx.15477.1.S1_at--767--595	1	NONE	GAGAAGGACATCTGCTCCTACGTGC	NONE
OsAffx.15477.1.S1_at--102--293	1	NONE	AAGGACATCTGCTCCTACGTGCCGA	NONE
OsAffx.15477.1.S1_at--336--989	1	Chr06:10381857..10381881 (25 bp)	TACGTGCCGACGTCGCGGTACTTGC	LOC_Os06g17890
OsAffx.15477.1.S1_at--132--577	1	Chr06:10381865..10381889 (25 bp)	GACGTCGCGGTACTTGCCGGCGCTC	LOC_Os06g17890
OsAffx.15477.1.S1_at--879--205	1	Chr06:10381945..10381969 (25 bp)	ACTTCTGCCTCATCTGCCATCGTGG	LOC_Os06g17890

Target Sequence

CTCTGCCGCTGCCAATGAGACGAGCCTCCTGCTCGGCGTCGAGAAGGACATCTGCTCCTACGTGCCGACGTCGCGGTACT
TGCCGGCGCTCCTAGCGCACGCACCGTCGAACCACACCGTCACCGACCAACTACCCACCGCCGCCGACTTCTGCCTCATC
TGCCATCGTGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis