Browse Element(s) Details


OsAffx.15478.2.S1_at

Description tigr:9634.m01781
TID=OsAffx.15478.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1793011/11NBS-LRR disease resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17910OsAffx.15478.3.S1_at11/116+10396098..10398254NBS-LRR disease resistance protein, putative
LOC_Os06g17920OsAffx.15478.1.S1_at10/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920Os.50906.1.S1_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.8356.1.S1_x_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.24024.1.S1_at1/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17930OsAffx.15478.2.S1_at11/116+10419704..10426558NBS-LRR disease resistance protein, putative
LOC_Os06g17940OsAffx.27690.1.S1_at10/116+10431044..10433306hypothetical protein
LOC_Os06g17950Os.34061.1.S2_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S1_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S3_at10/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17960NANA6+10441638..10442048hypothetical protein
LOC_Os06g17970Os.50906.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17970Os.52342.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15478.2.S1_at--356--9271Chr06:10425994..10426018 (25 bp)
TCCTCCTCTGTTACTAAAGACACTC
LOC_Os06g17930
OsAffx.15478.2.S1_at--308--4771Chr06:10426153..10426177 (25 bp)
GCTGCTTTGTCTTTCACTTGATGCT
LOC_Os06g17930
OsAffx.15478.2.S1_at--150--4931Chr06:10426211..10426235 (25 bp)
GCATTCCAAAAGCTCAGGACACTTT
LOC_Os06g17930
OsAffx.15478.2.S1_at--635--3311Chr06:10426230..10426254 (25 bp)
CACTTTGGTTTGACAAGCTGGATCA
LOC_Os06g17930
OsAffx.15478.2.S1_at--313--10091Chr06:10426267..10426291 (25 bp)
TAGGTTTGAGAACGACAGCTCGCCC
LOC_Os06g17930
OsAffx.15478.2.S1_at--392--2151Chr06:10426281..10426305 (25 bp)
ACAGCTCGCCCCTATTGGAAAAGAT
LOC_Os06g17930
OsAffx.15478.2.S1_at--770--6491Chr06:10426303..10426327 (25 bp)
GATAGGAATCCGATACTGCAGGTTG
LOC_Os06g17930
OsAffx.15478.2.S1_at--916--7851Chr06:10426343..10426367 (25 bp)
GGTATCTCTAACCTTATGAGGCTAA
LOC_Os06g17930
OsAffx.15478.2.S1_at--1004--5951Chr06:10426422..10426446 (25 bp)
GAGAAGTTGGCACACACCCAAATCG
LOC_Os06g17930
OsAffx.15478.2.S1_at--534--2271Chr06:10426441..10426465 (25 bp)
AAATCGCCCCGTGCTACGTATGGAG
LOC_Os06g17930
OsAffx.15478.2.S1_at--69--5831Chr06:10426469..10426493 (25 bp)
GACCGAAGCTGTCACGACCTGAGAA
LOC_Os06g17930
Target Sequence 
TCCTCCTCTGTTACTAAAGACACTCAAGTTGTATGGAGATCTTGAAGAGATGCCCAACTGGATTGAGCAGCTCTCGCACC
TCATGAAGTTCTACTTATTAGGGAGTAAACTAAAGGAAGGAAAAACCATGCTGATACTTGGGGCATTGCCCAACCTCATG
CTGCTTTGTCTTTCACTTGATGCTTACCTCGGGGAGAATCTAGTATTCAGAACAGGAGCATTCCAAAAGCTCAGGACACT
TTGGTTTGACAAGCTGGATCAGCTAAGAGAGATTAGGTTTGAGAACGACAGCTCGCCCCTATTGGAAAAGATAGGAATCC
GATACTGCAGGTTGGAAATAGGGATTATTGGTATCTCTAACCTTATGAGGCTAAAGGAAATTACACTTGGATACAGAGTT
AAAGTTGGTTATCTTGGTCAGTTGGAAAGAGAAGTTGGCACACACCCAAATCGCCCCGTGCTACGTATGGAGGAGGACCG
AAGCTGTCACGACCTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15478.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis