Browse Element(s) Details


OsAffx.15503.1.S1_at

Description tigr:9634.m01929
TID=OsAffx.15503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g199109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19880NANA6+11365619..11366026transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19890NANA6+11367536..11370862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19900OsAffx.435.1.S1_at1/116+11381885..11389124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19910OsAffx.15503.1.S1_x_at10/116+11390392..11391975hypothetical protein
LOC_Os06g19910OsAffx.15503.1.S1_at9/116+11390392..11391975hypothetical protein
LOC_Os06g19910OsAffx.30326.1.S1_x_at3/116+11390392..11391975hypothetical protein
LOC_Os06g19920OsAffx.7163.1.S1_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19920OsAffx.22167.1.S1_x_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19920OsAffx.22167.1.S1_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19930Os.17297.1.S1_at1/116+11411055..11415473retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.15504.1.S1_at10/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.20733.1.A1_x_at4/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940Os.45173.1.S1_x_at3/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.20691.1.A1_x_at2/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15503.1.S1_at--191--4371NONE
CCACACACCGGATTATTTGTTATTC
NONE
OsAffx.15503.1.S1_at--57--1651NONE
ACCGGATTATTTGTTATTCGTGTTG
NONE
OsAffx.15503.1.S1_at--76--10211Chr06:11390868..11390906 (25 bp)
TATTTGTTATTCGTGTTGGCGGCAT
LOC_Os06g19910
OsAffx.15503.1.S1_at--111--8791Chr06:11390864..11390887 (24 bp)
TGTTATTCGTGTTGGCGGCATGTCA
LOC_Os06g19910
OsAffx.15503.1.S1_at--499--9151Chr06:11390819..11390843 (25 bp)
TGCCGAAACCGGGCCAACCAGTGGG
LOC_Os06g19910
OsAffx.15503.1.S1_at--560--9372Chr12:11648283..11648778 (25 bp)
TCGAGTCTGTCAGGGCGAAGCCACC
NONE
OsAffx.15503.1.S1_at--270--10311Chr06:11390654..11390678 (25 bp)
TTTCGACAAGCCAGCTACTGGTACC
LOC_Os06g19910
OsAffx.15503.1.S1_at--404--2211Chr06:11390649..11390673 (25 bp)
ACAAGCCAGCTACTGGTACCCCAAG
LOC_Os06g19910
OsAffx.15503.1.S1_at--781--4511Chr06:11390433..11390457 (25 bp)
GCCCCAATCCTTCCGTATTCGGTGG
LOC_Os06g19910
OsAffx.15503.1.S1_at--658--551Chr06:11390427..11390451 (25 bp)
ATCCTTCCGTATTCGGTGGGCTACA
LOC_Os06g19910
OsAffx.15503.1.S1_at--227--9251Chr06:11390426..11390450 (25 bp)
TCCTTCCGTATTCGGTGGGCTACAT
LOC_Os06g19910
Target Sequence 
CCACACACCGGATTATTTGTTATTCGTGTTGGCGGCATGTCATGAGACCCTTCGACCGGACCTGCCGAAACCGGGCCAAC
CAGTGGGGGCTCGAGCCCAAGACGTCGAGTCTGTCAGGGCGAAGCCACCTTCCGCTCCAGCCACTTCGTCGGGGCTGGTG
CCGAACACGGTCGACGCAGCGAAGGCAGCCGCGGCGGCGAGGGCGCTCCAGACCAGGGCGGAGATCCTTTCGACAAGCCA
GCTACTGGTACCCCAAGCTGCTCCGTCGCAGCCGGCGACGGCTTGGACCGCGCTCGCCGCCGCACAAGTCAACCCCAACC
TCGAAGCACAAACTGAAGCCGACATGGAGGCCATGCGCCAGAACTTGACGCGACTCCAAGACATGCTCCGCCAGATGCAA
GAACAACAGCAGGCGTACGAGGCAGCGCGGCAAGCCAAGGTCGCTTCGGCCCCAATCCTTCCGTATTCGGTGGGCTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis