Browse Element(s) Details


OsAffx.15553.1.S1_at

Description tigr:9634.m02193
TID=OsAffx.15553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2237011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22330Os.52267.1.S1_at11/116+12961886..12965474expressed protein
LOC_Os06g22340Os.49566.1.S1_at11/116+12966331..12968078Cytochrome P450 89A2, putative, expressed
LOC_Os06g22350OsAffx.4900.1.S1_at11/116+12972930..12977457expressed protein
LOC_Os06g22350OsAffx.13875.1.S1_at1/116+12972930..12977457expressed protein
LOC_Os06g22360OsAffx.27767.1.S1_at11/116+12982167..12982889hypothetical protein
LOC_Os06g22370OsAffx.15553.1.S1_at11/116+12987185..12989509hypothetical protein
LOC_Os06g22380Os.9581.1.S1_a_at11/116+12990293..12999795expressed protein
LOC_Os06g22380Os.50783.1.S1_x_at4/116+12990293..12999795expressed protein
LOC_Os06g22390Os.52552.1.S1_at11/116+13002029..13002794expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15553.1.S1_at--1037--10631Chr06:12987996..12988020 (25 bp)
TTCGCGCGCAGCACCCGTGGAAAGC
LOC_Os06g22370
OsAffx.15553.1.S1_at--1067--6831Chr06:12988865..12988889 (25 bp)
GTTTCTGAACATGCAAACCATCCAT
LOC_Os06g22370
OsAffx.15553.1.S1_at--1038--5691Chr06:12988900..12988924 (25 bp)
GACTTTGGTGTCATCTTTCTGCGAT
LOC_Os06g22370
OsAffx.15553.1.S1_at--256--10311Chr06:12988915..12988939 (25 bp)
TTTCTGCGATCCACAGGCCTATAGG
LOC_Os06g22370
OsAffx.15553.1.S1_at--1072--851Chr06:12988929..12988953 (25 bp)
AGGCCTATAGGTTTGACGCGGCGAA
LOC_Os06g22370
OsAffx.15553.1.S1_at--783--4631Chr06:12988986..12989010 (25 bp)
GCGTTGAATCAATCCCAAGGTCTAT
LOC_Os06g22370
OsAffx.15553.1.S1_at--831--2491Chr06:12989032..12989056 (25 bp)
AACAGTCGATGTAGTTTGCATGAAA
LOC_Os06g22370
OsAffx.15553.1.S1_at--1004--10271Chr06:12989060..12989084 (25 bp)
TTTCTGGTAAACCTGGAGGCTCGCT
LOC_Os06g22370
OsAffx.15553.1.S1_at--670--8011Chr06:12989074..12989098 (25 bp)
GGAGGCTCGCTTGTACACAGAGGCA
LOC_Os06g22370
OsAffx.15553.1.S1_at--681--4951Chr06:12989260..12989284 (25 bp)
GCATTTGAAATGCAAGCTAGGCTTC
LOC_Os06g22370
OsAffx.15553.1.S1_at--968--10091Chr06:12989277..12989470 (25 bp)
TAGGCTTCAACGTATCGCAGCGGTC
LOC_Os06g22370
Target Sequence 
TTCGCGCGCAGCACCCGTGGAAAGCTGGGAGGAAAATGTGGTATAGATTGCTTTGGTGCGAAGAAAATGATGGAAAGTGG
GCCGGTTGTGGCAGCAGACAGGGTGTGGAGAGATGCGTACGGTGTGAGCACCGAAAAATGGACGACAAAAGTTGAAATCA
AAGTGAAGAATGTTTCTGAACATGCAAACCATCCATCAAAGATGGAGACTTTGGTGTCATCTTTCTGCGATCCACAGGCC
TATAGGTTTGACGCGGCGAAAAATGAACATTATGTTTGTGGTTTTGCAAAAAGCGTTGAATCAATCCCAAGGTCTATATA
TCTGAAACTAAAGTATGAAACAGTCGATGTAGTTTGCATGAAATCGTTTCTGGTAAACCTGGAGGCTCGCTTGTACACAG
AGGCAGAGGGTGATATTGGTGCTGAAGAACCAGATCCTGAGATGTATGAGGATCCAGATGTGGTAAGGGAAGCATTTGAA
ATGCAAGCTAGGCTTCAACGTATCGCAGCGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis