Browse Element(s) Details


OsAffx.15567.2.S1_s_at

Description tigr:9629.m06177
TID=OsAffx.15567.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6254011/11hypothetical protein
LOC_Os06g2297011/11hypothetical protein
LOC_Os10g375904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62510OsAffx.9554.1.S1_at11/111+36515551..36518530WRKY DNA binding domain containing protein
LOC_Os01g62520Os.54691.1.S1_x_at2/111+36534712..36537496Zinc knuckle family protein
LOC_Os01g62530OsAffx.11698.1.S1_at11/111+36539139..36540074hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_s_at11/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_at10/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.20192.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.14237.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62550OsAffx.2391.1.S1_at7/111+36543644..36545167hypothetical protein
LOC_Os01g62560OsAffx.21746.1.S1_at11/111+36546114..36547259expressed protein
LOC_Os01g62570NANA1+36549197..36555431GTP-binding protein, putative
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15567.2.S1_s_at--504--10734Chr07:21902329..21902353 (25 bp)
TTGCAATAGCTTACAAATTAGAAAC
NONE
OsAffx.15567.2.S1_s_at--1075--732Chr06:13412729..13412753 (25 bp)
ATGTTATTGTTTTCTACTTATATGA
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--587--3652Chr06:13412783..13412807 (25 bp)
CTTCTTCAAAATCTAATCTCCAGTT
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--997--3252Chr06:13412789..13412813 (25 bp)
CAAAATCTAATCTCCAGTTCATTGA
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--973--3052Chr06:13412797..13412821 (25 bp)
AATCTCCAGTTCATTGAGCATCGAC
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--693--9192Chr06:13412801..13412825 (25 bp)
TCCAGTTCATTGAGCATCGACGAAT
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--446--8912Chr06:13412811..13412835 (25 bp)
TGAGCATCGACGAATGCGCCATCGT
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--294--8273Chr06:13412877..13412901 (25 bp)
GGCAGTTGCATTCATCGATATCGTG
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--568--6673Chr06:13412881..13412905 (25 bp)
GTTGCATTCATCGATATCGTGGTGT
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--183--9613Chr06:13412888..13412912 (25 bp)
TCATCGATATCGTGGTGTTTGTGGT
LOC_Os06g22970
OsAffx.15567.2.S1_s_at--299--9612Chr06:13412987..13413011 (25 bp)
TCATCTACATTGACAGCAACGGTGA
LOC_Os06g22970
Target Sequence 
TTGCAATAGCTTACAAATTAGAAACAATAGTTAATGTTATTGTTTTCTACTTATATGATAAGTACAATGTCTACTTAGGA
ATCACAGCTTCTTCAAAATCTAATCTCCAGTTCATTGAGCATCGACGAATGCGCCATCGTCGAGAATATCGATGCCATAT
GGTTGTGGTCAAGGTTGTGCTGGCAGTTGCATTCATCGATATCGTGGTGTTTGTGGTGGGCGGCCTCGGAGGATCGTCAC
CACCGGCGGATGGGCAGGCAACAGCACCGACGAAGGCGCCGCCACGGGGATTCATCTACATTGACAGCAACGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15567.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis