Browse Element(s) Details


OsAffx.15568.1.S1_at

Description tigr:9634.m02266
TID=OsAffx.15568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2304011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22980Os.53359.1.S1_at11/116+13413642..13417273cellulose synthase family protein, putative, expressed
LOC_Os06g22980Os.57510.1.S1_x_at1/116+13413642..13417273cellulose synthase family protein, putative, expressed
LOC_Os06g22990Os.41695.4.S1_x_at4/116+13418088..13422242hypothetical protein
LOC_Os06g22990Os.41695.3.S1_x_at1/116+13418088..13422242hypothetical protein
LOC_Os06g22990Os.41695.2.S1_x_at1/116+13418088..13422242hypothetical protein
LOC_Os06g23010OsAffx.4909.1.S1_at11/116+13427643..13430617hypothetical protein
LOC_Os06g23020OsAffx.4910.1.S1_at11/116+13433832..13434940hypothetical protein
LOC_Os06g23030OsAffx.4911.1.S1_x_at11/116+13438252..13438923ZF-HD protein dimerisation region containing protein
LOC_Os06g23030OsAffx.4911.1.S1_at11/116+13438252..13438923ZF-HD protein dimerisation region containing protein
LOC_Os06g23040OsAffx.15568.1.S1_at11/116+13439853..13441507expressed protein
LOC_Os06g23040Os.49364.1.A1_x_at1/116+13439853..13441507expressed protein
LOC_Os06g23050OsAffx.15569.1.S1_at11/116+13443122..13443592AP2 domain containing protein
LOC_Os06g23060OsAffx.15570.1.S1_at11/116+13446100..13446756hypothetical protein
LOC_Os06g23070OsAffx.22368.1.S1_x_at1/116+13447494..13452398retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23080OsAffx.20628.1.S1_at3/116+13453972..13456878retrotransposon protein, putative, unclassified
LOC_Os06g23090OsAffx.15571.1.S1_at10/116+13463026..13468259hypothetical protein
LOC_Os06g23090Os.50619.1.S1_at1/116+13463026..13468259hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15568.1.S1_at--484--3891Chr06:13440012..13440036 (25 bp)
CTGTGTGCGGCAACGGCCAAGATCG
LOC_Os06g23040
OsAffx.15568.1.S1_at--209--6911Chr06:13440261..13440285 (25 bp)
GTAGGGCCCGGATGTCGAAATCGAC
LOC_Os06g23040
OsAffx.15568.1.S1_at--693--951Chr06:13440437..13440461 (25 bp)
AGGAGGGAGGCCGTCACCAACCCTG
LOC_Os06g23040
OsAffx.15568.1.S1_at--156--1071Chr06:13441278..13441302 (25 bp)
AGGGTTTCGAGACTTCCATTAGCTT
LOC_Os06g23040
OsAffx.15568.1.S1_at--966--1551Chr06:13441298..13441322 (25 bp)
AGCTTAGCACCAAAGCGCTTAGCGA
LOC_Os06g23040
OsAffx.15568.1.S1_at--1004--5751Chr06:13441331..13441355 (25 bp)
GACGTCGATCGCAGGACATCCTTTA
LOC_Os06g23040
OsAffx.15568.1.S1_at--1142--3331Chr06:13441347..13441371 (25 bp)
CATCCTTTAGGTGGAACGACTTAAT
LOC_Os06g23040
OsAffx.15568.1.S1_at--845--5691Chr06:13441364..13441388 (25 bp)
GACTTAATTGTGGTATTCCGCCGAT
LOC_Os06g23040
OsAffx.15568.1.S1_at--868--10211Chr06:13441377..13441401 (25 bp)
TATTCCGCCGATTCAAGGGAAGGAC
LOC_Os06g23040
OsAffx.15568.1.S1_at--349--8191Chr06:13441394..13441418 (25 bp)
GGAAGGACACGGTATTGCAATAATC
LOC_Os06g23040
OsAffx.15568.1.S1_at--575--10191Chr06:13441447..13441471 (25 bp)
TATTATCCTGAGAGGTGGTTCTGGA
LOC_Os06g23040
Target Sequence 
CTGTGTGCGGCAACGGCCAAGATCGGCGGCAAGGGTGGGGAGGGAAGGCGCAGAGGCAGTGATGGCGATGGAAAAGGCGA
AGGTCGGAGTGGACCGAGCCGGCAGAGCGCAAGGAGCAAGGTGGTGGATGTGATGGACGGCGGCAGTAGGGCCCGGATGT
CGAAATCGACACAGGGGAAGGAGTACAAGGAGGGCGTTGGTGATTTGGGAGCACGGTGCAGGAGGGAGGCCGTCACCAAC
CCTGCCGGGGAAAGAAACAACATTGCGACAAATGGAAAGGGTTTCGAGACTTCCATTAGCTTAGCACCAAAGCGCTTAGC
GAAAAGGAAGGACGTCGATCGCAGGACATCCTTTAGGTGGAACGACTTAATTGTGGTATTCCGCCGATTCAAGGGAAGGA
CACGGTATTGCAATAATCTAGGAAGGTTGAGAGGACAAAGAAGGGATATTATCCTGAGAGGTGGTTCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis