Browse Element(s) Details

Os.53359.1.S1_at

Description

gb:AK072260.1
DB_XREF= gi:32982283
TID=Os.53359.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023005B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023005B09, full insert sequence.
FL= gb:AK072260.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g22980	11/11	cellulose synthase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g22919	OsAffx.4907.1.S1_x_at	11/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.33878.1.S1_at	11/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.51910.1.S1_x_at	4/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	OsAffx.28164.2.S1_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.52051.1.S1_x_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.51910.1.S1_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.27037.1.A1_at	1/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22940	OsAffx.15565.1.S1_at	10/11	6	+	13390514..13392026	hypothetical protein
LOC_Os06g22950	NA	NA	6	+	13393970..13396304	hypothetical protein
LOC_Os06g22960	Os.28214.2.S1_x_at	11/11	6	+	13406320..13407829	aquaporin TIP-type RB7-18C, putative, expressed
LOC_Os06g22970	OsAffx.15567.2.S1_s_at	11/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22970	OsAffx.20192.1.S1_at	4/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22970	OsAffx.24960.1.S1_at	1/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22980	Os.53359.1.S1_at	11/11	6	+	13413642..13417273	cellulose synthase family protein, putative, expressed
LOC_Os06g22980	Os.57510.1.S1_x_at	1/11	6	+	13413642..13417273	cellulose synthase family protein, putative, expressed
LOC_Os06g22990	Os.41695.4.S1_x_at	4/11	6	+	13418088..13422242	hypothetical protein
LOC_Os06g22990	Os.41695.3.S1_x_at	1/11	6	+	13418088..13422242	hypothetical protein
LOC_Os06g22990	Os.41695.2.S1_x_at	1/11	6	+	13418088..13422242	hypothetical protein
LOC_Os06g23010	OsAffx.4909.1.S1_at	11/11	6	+	13427643..13430617	hypothetical protein
LOC_Os06g23020	OsAffx.4910.1.S1_at	11/11	6	+	13433832..13434940	hypothetical protein
LOC_Os06g23030	OsAffx.4911.1.S1_x_at	11/11	6	+	13438252..13438923	ZF-HD protein dimerisation region containing protein
LOC_Os06g23030	OsAffx.4911.1.S1_at	11/11	6	+	13438252..13438923	ZF-HD protein dimerisation region containing protein
LOC_Os06g23040	OsAffx.15568.1.S1_at	11/11	6	+	13439853..13441507	expressed protein
LOC_Os06g23040	Os.49364.1.A1_x_at	1/11	6	+	13439853..13441507	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000271	biological_process	polysaccharide biosynthesis
GO:0009832	biological_process	cell wall biosynthesis (sensu Magnoliophyta)
GO:0005783	cellular_component	endoplasmic reticulum
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups
GO:0016759	molecular_function	cellulose synthase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53359.1.S1_at--121--805	1	Chr06:13416678..13416702 (25 bp)	GGAGATCCCGCAGTACAGCAAGCTG	LOC_Os06g22980
Os.53359.1.S1_at--850--835	1	Chr06:13416880..13416904 (25 bp)	GGCGGCATCGACGTGTGACTTTTCG	LOC_Os06g22980
Os.53359.1.S1_at--826--893	1	Chr06:13416895..13416919 (25 bp)	TGACTTTTCGTGACACACACCATCA	LOC_Os06g22980
Os.53359.1.S1_at--1024--51	1	Chr06:13416938..13416962 (25 bp)	ATCGATCGAGATATGCATGGCCAGA	LOC_Os06g22980
Os.53359.1.S1_at--246--1011	1	Chr06:13416989..13417013 (25 bp)	TATGTGCCAATTGCATGAACCGTGC	LOC_Os06g22980
Os.53359.1.S1_at--748--897	1	Chr06:13417004..13417028 (25 bp)	TGAACCGTGCACTACATGCATCGAT	LOC_Os06g22980
Os.53359.1.S1_at--498--903	1	Chr06:13417035..13417059 (25 bp)	TGCACTGTACGTTCAAGATGTTCTG	LOC_Os06g22980
Os.53359.1.S1_at--256--629	1	Chr06:13417051..13417075 (25 bp)	GATGTTCTGGTTAGTGTGTCGTGTT	LOC_Os06g22980
Os.53359.1.S1_at--907--153	1	Chr06:13417122..13417146 (25 bp)	AGCATGTACGTCCTGTGTTACTTAA	LOC_Os06g22980
Os.53359.1.S1_at--896--441	1	Chr06:13417151..13417175 (25 bp)	GCCAGAGCAGGGTCCATTTTGTACA	LOC_Os06g22980
Os.53359.1.S1_at--418--1081	1	Chr06:13417169..13417193 (25 bp)	TTGTACAAGAGTTTCCCATGTGTGT	LOC_Os06g22980

Target Sequence

GGAGATCCCGCAGTACAGCAAGCTGCTCGGCGGCGGCTTCTTCAGCTTCTGGGTGCTCGCGCACTACTACCCGTTCGCCA
AGGGCCTCATGGGCCGCCGCGGCCGGACGCCCACCATCGTCTACGTCTGGGCCGGCCTCATCTCCATCACCGTCTCTCTC
CTCTGGATCACCATTAGCCCCCCGGATGATAGCGTCGCGCGGGGCGGCATCGACGTGTGACTTTTCGTGACACACACCAT
CACCCATCACTGGTACTAAGATCGATCGAGATATGCATGGCCAGACATACAAGAAATTGCCAAGAGATTTATATGTGCCA
ATTGCATGAACCGTGCACTACATGCATCGATCAGATTTGCACTGTACGTTCAAGATGTTCTGGTTAGTGTGTCGTGTTGG
AGTACTGATTTGGTTTTTGTAAGAAAGAATTTGCTGGGTTTATTAGCATGTACGTCCTGTGTTACTTAAGGATGCCAGAG
CAGGGTCCATTTTGTACAAGAGTTTCCCATGTGTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis