Browse Element(s) Details


OsAffx.15690.1.S1_at

Description tigr:9634.m03011
TID=OsAffx.15690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3123011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g31210Os.2620.1.S1_at11/116+18144504..18153535methionyl-tRNA synthetase, putative, expressed
LOC_Os06g31220Os.27698.1.A1_x_at11/116+18158615..18163567hypothetical protein
LOC_Os06g31220Os.27698.1.A1_at11/116+18158615..18163567hypothetical protein
LOC_Os06g31230OsAffx.15690.1.S1_at11/116+18167529..18167756hypothetical protein
LOC_Os06g31240OsAffx.29222.1.S1_at2/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.13772.1.S1_at2/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.13772.1.S1_x_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.8916.1.S1_x_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.19035.2.S1_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.29222.1.S1_x_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.19035.1.S1_x_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31250NANA6+18174979..18180720transposon protein, putative, unclassified, expressed
LOC_Os06g31260OsAffx.24121.1.S1_at1/116+18182975..18183670hypothetical protein
LOC_Os06g31260OsAffx.24121.3.S1_at1/116+18182975..18183670hypothetical protein
LOC_Os06g31270NANA6+18185741..18187531Polygalacturonase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15690.1.S1_at--1024--8351Chr06:18167565..18167589 (25 bp)
GGCGGAAGGAGCCAAGCTCACCTTT
LOC_Os06g31230
OsAffx.15690.1.S1_at--48--891Chr06:18167571..18167595 (25 bp)
AGGAGCCAAGCTCACCTTTATGGTG
LOC_Os06g31230
OsAffx.15690.1.S1_at--15--3251Chr06:18167577..18167601 (25 bp)
CAAGCTCACCTTTATGGTGCCGAAG
LOC_Os06g31230
OsAffx.15690.1.S1_at--820--1571Chr06:18167579..18167603 (25 bp)
AGCTCACCTTTATGGTGCCGAAGGG
LOC_Os06g31230
OsAffx.15690.1.S1_at--113--7851Chr06:18167603..18167627 (25 bp)
GGTTTTGGTGGTGAACGGCTTTGAG
LOC_Os06g31230
OsAffx.15690.1.S1_at--78--8971Chr06:18167614..18167638 (25 bp)
TGAACGGCTTTGAGGAATCGGTGGC
LOC_Os06g31230
OsAffx.15690.1.S1_at--787--7691Chr06:18167641..18167665 (25 bp)
GGGTACTGCTCGATGCGGTTAACGC
LOC_Os06g31230
OsAffx.15690.1.S1_at--501--6951Chr06:18167643..18167667 (25 bp)
GTACTGCTCGATGCGGTTAACGCAA
LOC_Os06g31230
OsAffx.15690.1.S1_at--147--4811Chr06:18167648..18167672 (25 bp)
GCTCGATGCGGTTAACGCAATGGAA
LOC_Os06g31230
OsAffx.15690.1.S1_at--1008--3191Chr06:18167665..18167689 (25 bp)
CAATGGAAGTGGTGGTGCAGCTTGA
LOC_Os06g31230
OsAffx.15690.1.S1_at--898--7331Chr06:18167679..18167703 (25 bp)
GTGCAGCTTGAGGTGACCGGAGACG
LOC_Os06g31230
Target Sequence 
GGCGGAAGGAGCCAAGCTCACCTTTATGGTGCCGAAGGGGTTTTGGTGGTGAACGGCTTTGAGGAATCGGTGGCCGGGGT
ACTGCTCGATGCGGTTAACGCAATGGAAGTGGTGGTGCAGCTTGAGGTGACCGGAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis