Browse Element(s) Details


Os.27698.1.A1_at

Description gb:AK100292.1
DB_XREF= gi:32985501
TID=Os.27698.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075L12, full insert sequence.
FL= gb:AK100292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3122011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g31200OsAffx.22759.1.S1_at5/116+18130421..18137039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31200Os.36476.1.S1_at1/116+18130421..18137039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31210Os.2620.1.S1_at11/116+18144504..18153535methionyl-tRNA synthetase, putative, expressed
LOC_Os06g31220Os.27698.1.A1_x_at11/116+18158615..18163567hypothetical protein
LOC_Os06g31220Os.27698.1.A1_at11/116+18158615..18163567hypothetical protein
LOC_Os06g31230OsAffx.15690.1.S1_at11/116+18167529..18167756hypothetical protein
LOC_Os06g31240OsAffx.29222.1.S1_at2/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.13772.1.S1_at2/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.13772.1.S1_x_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.8916.1.S1_x_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.19035.2.S1_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.29222.1.S1_x_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31240OsAffx.19035.1.S1_x_at1/116+18171014..18173706retrotransposon protein, putative, unclassified
LOC_Os06g31250NANA6+18174979..18180720transposon protein, putative, unclassified, expressed
LOC_Os06g31260OsAffx.24121.1.S1_at1/116+18182975..18183670hypothetical protein
LOC_Os06g31260OsAffx.24121.3.S1_at1/116+18182975..18183670hypothetical protein
LOC_Os06g31270NANA6+18185741..18187531Polygalacturonase family protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27698.1.A1_at--266--7971Chr06:18159210..18159234 (25 bp)
GGATCTCCCTATTTGGTTAGTTGGA
LOC_Os06g31220
Os.27698.1.A1_at--751--451Chr06:18159208..18159232 (25 bp)
ATCTCCCTATTTGGTTAGTTGGATC
LOC_Os06g31220
Os.27698.1.A1_at--38--4191Chr06:18159204..18159228 (25 bp)
CCCTATTTGGTTAGTTGGATCACAC
LOC_Os06g31220
Os.27698.1.A1_at--393--10211Chr06:18159199..18159223 (25 bp)
TTTGGTTAGTTGGATCACACCGTAG
LOC_Os06g31220
Os.27698.1.A1_at--437--6451Chr06:18159187..18159211 (25 bp)
GATCACACCGTAGAGAACGCAATGT
LOC_Os06g31220
Os.27698.1.A1_at--867--3331Chr06:18159182..18159206 (25 bp)
CACCGTAGAGAACGCAATGTAATAC
LOC_Os06g31220
Os.27698.1.A1_at--821--6931Chr06:18159178..18159202 (25 bp)
GTAGAGAACGCAATGTAATACATCT
LOC_Os06g31220
Os.27698.1.A1_at--666--7071Chr06:18159164..18159188 (25 bp)
GTAATACATCTTTATTGACATCATT
LOC_Os06g31220
Os.27698.1.A1_at--795--2091Chr06:18159159..18159183 (25 bp)
ACATCTTTATTGACATCATTTTTTA
LOC_Os06g31220
Os.27698.1.A1_at--429--2171Chr06:18159114..18159138 (25 bp)
AACTTAAAAATACACTGGCATTTGT
LOC_Os06g31220
Os.27698.1.A1_at--918--3331Chr06:18159102..18159126 (25 bp)
CACTGGCATTTGTATGGTGTGACAA
LOC_Os06g31220
Target Sequence 
GGATCTCCCTATTTGGTTAGTTGGATCACACCGTAGAGAACGCAATGTAATACATCTTTATTGACATCATTTTTTATTGT
TGAAAAATTTCAAATTAACTTAAAAATACACTGGCATTTGTATGGTGTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27698.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis