Browse Element(s) Details


OsAffx.15745.1.S1_at

Description tigr:9634.m03297
TID=OsAffx.15745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=reverse transcriptase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3489011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34850Os.52072.1.S1_at11/116+20264692..20265467expressed protein
LOC_Os06g34860NANA6+20269647..20270150Zinc finger, C3HC4 type family protein
LOC_Os06g34870NANA6+20275504..20280210Zinc finger, C3HC4 type family protein
LOC_Os06g34880OsAffx.27942.1.S1_at1/116+20285764..20286147Zinc finger, C3HC4 type family protein
LOC_Os06g34890OsAffx.15745.1.S1_at11/116+20288016..20288432hypothetical protein
LOC_Os06g34900OsAffx.15746.1.S1_at11/116+20293147..20294403hypothetical protein
LOC_Os06g34900Os.49802.1.S2_at1/116+20293147..20294403hypothetical protein
LOC_Os06g34910OsAffx.13264.1.S1_x_at4/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.17017.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.13264.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.10233.1.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.22682.2.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34920OsAffx.16430.1.S1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34920OsAffx.24744.4.A1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15745.1.S1_at--891--9111Chr06:20288368..20288392 (25 bp)
TGCTGCAACAACCACCGACGAATGA
LOC_Os06g34890
OsAffx.15745.1.S1_at--799--271Chr06:20288338..20288362 (25 bp)
ATATGGATACGGGTGCCACCGCACA
LOC_Os06g34890
OsAffx.15745.1.S1_at--1034--5111Chr06:20288318..20288342 (25 bp)
GCACACATGATTTCGGACGCCGATA
LOC_Os06g34890
OsAffx.15745.1.S1_at--332--251Chr06:20288249..20288273 (25 bp)
ATAGTTGTCGGCAACGGCTCTACTA
LOC_Os06g34890
OsAffx.15745.1.S1_at--733--4811Chr06:20288233..20288257 (25 bp)
GCTCTACTATACCTATCACTTCTAT
LOC_Os06g34890
OsAffx.15745.1.S1_at--1059--6751Chr06:20288207..20288231 (25 bp)
GTTCAAACTAATCTTCATCACCCTA
LOC_Os06g34890
OsAffx.15745.1.S1_at--5--2331Chr06:20288165..20288189 (25 bp)
AAAGATATTCTTGACTCCCTAGTTA
LOC_Os06g34890
OsAffx.15745.1.S1_at--98--10211Chr06:20288127..20288151 (25 bp)
TATTTATGTCCGTCGCTTTGTTATT
LOC_Os06g34890
OsAffx.15745.1.S1_at--747--3171Chr06:20288099..20288123 (25 bp)
AATTGGTGCTCCATCGAGTTTGACC
LOC_Os06g34890
OsAffx.15745.1.S1_at--658--1191Chr06:20288083..20288107 (25 bp)
AGTTTGACCTCTTTGGCTTTACTAT
LOC_Os06g34890
OsAffx.15745.1.S1_at--851--8991Chr06:20288059..20288083 (25 bp)
TGAAGGATCTTTGTCCCAGGACCGT
LOC_Os06g34890
Target Sequence 
TGCTGCAACAACCACCGACGAATGAATTGTATATGGATACGGGTGCCACCGCACACATGATTTCGGACGCCGATAGCCTC
TCCTTCACCCACCCACCCACCTCTCATGATCCCTCCCACATAGTTGTCGGCAACGGCTCTACTATACCTATCACTTCTAT
TGTTCAAACTAATCTTCATCACCCTAACCGTTCCTTTACTCTTAAAGATATTCTTGACTCCCTAGTTATCATTAAGAATC
TTATTTATGTCCGTCGCTTTGTTATTGATAATTGGTGCTCCATCGAGTTTGACCTCTTTGGCTTTACTATGAAGGATCTT
TGTCCCAGGACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis