Browse Element(s) Details


OsAffx.15746.1.S1_at

Description tigr:9634.m03298
TID=OsAffx.15746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3490011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34860NANA6+20269647..20270150Zinc finger, C3HC4 type family protein
LOC_Os06g34870NANA6+20275504..20280210Zinc finger, C3HC4 type family protein
LOC_Os06g34880OsAffx.27942.1.S1_at1/116+20285764..20286147Zinc finger, C3HC4 type family protein
LOC_Os06g34890OsAffx.15745.1.S1_at11/116+20288016..20288432hypothetical protein
LOC_Os06g34900OsAffx.15746.1.S1_at11/116+20293147..20294403hypothetical protein
LOC_Os06g34900Os.49802.1.S2_at1/116+20293147..20294403hypothetical protein
LOC_Os06g34910OsAffx.13264.1.S1_x_at4/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.17017.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.13264.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.10233.1.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.22682.2.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34920OsAffx.16430.1.S1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34920OsAffx.24744.4.A1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34930OsAffx.5014.1.S1_at11/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34930OsAffx.25437.1.S1_at1/116+20313564..20314273Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15746.1.S1_at--433--9991Chr06:20293188..20293212 (25 bp)
TAGCCAAACGAATCACACTGCAGGT
LOC_Os06g34900
OsAffx.15746.1.S1_at--72--3091Chr06:20293198..20293222 (25 bp)
AATCACACTGCAGGTTTTGCCCCTA
LOC_Os06g34900
OsAffx.15746.1.S1_at--584--4191Chr06:20293247..20293271 (25 bp)
CCCTCTTGTGTTGCGGTGAATCTGA
LOC_Os06g34900
OsAffx.15746.1.S1_at--749--371Chr06:20293278..20293302 (25 bp)
ATCAACACTTAAAACCTGGGCTGAC
LOC_Os06g34900
OsAffx.15746.1.S1_at--1091--4891Chr06:20293316..20293340 (25 bp)
GCTTACCCTCGCCTAGGAAAGTCGG
LOC_Os06g34900
OsAffx.15746.1.S1_at--890--2851Chr06:20293347..20293371 (25 bp)
AAGTGCTATACTACAGGTCCAGAAG
LOC_Os06g34900
OsAffx.15746.1.S1_at--1031--3391Chr06:20293366..20293390 (25 bp)
CAGAAGTTACCCTTTCTTGCTTGGG
LOC_Os06g34900
OsAffx.15746.1.S1_at--194--9331Chr06:20294146..20294170 (25 bp)
TCCCACACGTGGGTGACTCAAGGAG
LOC_Os06g34900
OsAffx.15746.1.S1_at--1000--8531Chr06:20294185..20294209 (25 bp)
TGGAGCGGGTCCACATGCGCACTGT
LOC_Os06g34900
OsAffx.15746.1.S1_at--825--7551Chr06:20294214..20294238 (25 bp)
GGGCGCACCATGTGGCACACACGTT
LOC_Os06g34900
OsAffx.15746.1.S1_at--814--2171Chr06:20294232..20294256 (25 bp)
ACACGTTGCGGCCACAGCGAACAAG
LOC_Os06g34900
Target Sequence 
TAGCCAAACGAATCACACTGCAGGTTTTGCCCCTACTCTTAAAATAGGGGTAGGCAGCCCCCTCTTGTGTTGCGGTGAAT
CTGAAAGCCAATCAACACTTAAAACCTGGGCTGACCCAACTCCATCACGCTTACCCTCGCCTAGGAAAGTCGGAAAGGGA
AGTGCTATACTACAGGTCCAGAAGTTACCCTTTCTTGCTTGGGGTAAGCACGCCGAAGGGGGAGCCGGTGTGACATGTGG
GTCCCACACGTGGGTGACTCAAGGAGGGGCGGGTGCACGGTGGAGCGGGTCCACATGCGCACTGTTCACGGGCGCACCAT
GTGGCACACACGTTGCGGCCACAGCGAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis