Browse Element(s) Details


OsAffx.15748.1.S1_at

Description tigr:9634.m03305
TID=OsAffx.15748.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3497011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34930OsAffx.5014.1.S1_at11/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34930OsAffx.25437.1.S1_at1/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34940OsAffx.27944.1.S1_at3/116+20321475..20321708hypothetical protein
LOC_Os06g34940OsAffx.27944.1.S1_x_at3/116+20321475..20321708hypothetical protein
LOC_Os06g34950OsAffx.27945.1.S1_at7/116+20322526..20323937hypothetical protein
LOC_Os06g34950Os.57368.1.S1_at3/116+20322526..20323937hypothetical protein
LOC_Os06g34960OsAffx.15747.1.S1_at10/116+20325285..20333177Protein kinase domain containing protein, expressed
LOC_Os06g34970OsAffx.15748.1.S1_at11/116+20336991..20337407hypothetical protein
LOC_Os06g34980NANA6+20345077..20347635Transposable element protein, putative, Retrotrans_gag
LOC_Os06g34990OsAffx.15749.1.S1_at11/116+20348103..20348567Cytochrome P450 71A26, putative
LOC_Os06g35000Os.47004.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35000Os.51990.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35010OsAffx.5015.1.S1_at11/116+20359901..20361245hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15748.1.S1_at--241--4671Chr06:20337331..20337355 (25 bp)
GCGTGGACGCCTACGGTCTGATCAG
LOC_Os06g34970
OsAffx.15748.1.S1_at--972--8531Chr06:20337328..20337352 (25 bp)
TGGACGCCTACGGTCTGATCAGCAT
LOC_Os06g34970
OsAffx.15748.1.S1_at--458--5811Chr06:20337326..20337350 (25 bp)
GACGCCTACGGTCTGATCAGCATGG
LOC_Os06g34970
OsAffx.15748.1.S1_at--838--4451Chr06:20337323..20337347 (25 bp)
GCCTACGGTCTGATCAGCATGGTGA
LOC_Os06g34970
OsAffx.15748.1.S1_at--373--1931Chr06:20337319..20337343 (25 bp)
ACGGTCTGATCAGCATGGTGACGGA
LOC_Os06g34970
OsAffx.15748.1.S1_at--756--9651Chr06:20337310..20337334 (25 bp)
TCAGCATGGTGACGGAGCGGGCGGA
LOC_Os06g34970
OsAffx.15748.1.S1_at--989--8351Chr06:20337291..20337315 (25 bp)
GGCGGAGAAGGTGCGGCGCAACAAG
LOC_Os06g34970
OsAffx.15748.1.S1_at--701--3271Chr06:20337273..20337297 (25 bp)
CAACAAGTACGAGTGCCGGCAGCTG
LOC_Os06g34970
OsAffx.15748.1.S1_at--38--9951Chr06:20337266..20337290 (25 bp)
TACGAGTGCCGGCAGCTGGCGGAGC
LOC_Os06g34970
OsAffx.15748.1.S1_at--772--8331Chr06:20337249..20337273 (25 bp)
GGCGGAGCACGTGGAAACGGTCGGG
LOC_Os06g34970
OsAffx.15748.1.S1_at--151--9131Chr06:20337125..20337149 (25 bp)
TGCGAGGCCAGCAGCTACTTCCGCC
LOC_Os06g34970
Target Sequence 
GCGTGGACGCCTACGGTCTGATCAGCATGGTGACGGAGCGGGCGGAGAAGGTGCGGCGCAACAAGTACGAGTGCCGGCAG
CTGGCGGAGCACGTGGAAACGGTCGGGGGGCTCCTGCATCACGTGGAGAGGGACGACCCGCGGATCGCCGCCCCGCTGGA
GAAGCTGGAGGGGACGCTCCGGGAGGCCGTCGTGCTCGTCTCCTCCTGCGAGGCCAGCAGCTACTTCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis