Browse Element(s) Details

OsAffx.15759.1.S1_at

Description

tigr:9634.m03385
TID=OsAffx.15759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g35760	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g35710	OsAffx.22947.1.S1_x_at	11/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.2.S1_x_at	4/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.3.S1_x_at	3/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.5.S1_x_at	3/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35720	NA	NA	6	+	20846326..20848652	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35730	Os.38797.1.S1_at	3/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730	OsAffx.25258.2.S1_x_at	2/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730	OsAffx.25258.2.S1_at	1/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35740	OsAffx.5022.1.S1_at	11/11	6	+	20858957..20859831	hypothetical protein
LOC_Os06g35750	OsAffx.27954.1.S1_at	11/11	6	+	20860227..20861352	hypothetical protein
LOC_Os06g35760	OsAffx.15759.1.S1_at	10/11	6	+	20863870..20864853	hypothetical protein
LOC_Os06g35770	NA	NA	6	+	20867429..20868548	expressed protein
LOC_Os06g35780	Os.46785.2.S1_x_at	2/11	6	+	20878191..20883205	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35790	NA	NA	6	+	20884780..20885037	hypothetical protein
LOC_Os06g35800	Os.38395.3.S1_x_at	11/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.2.S1_x_at	9/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.5.S1_at	3/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.1.S1_at	1/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15759.1.S1_at--243--301	1	Chr06:20863901..20863925 (25 bp)	AATGCTGGGTCCTCCTAGAGCTGGC	LOC_Os06g35760
OsAffx.15759.1.S1_at--34--863	1	Chr06:20863906..20863930 (25 bp)	TGGGTCCTCCTAGAGCTGGCATATC	LOC_Os06g35760
OsAffx.15759.1.S1_at--4--927	1	Chr06:20863910..20863934 (25 bp)	TCCTCCTAGAGCTGGCATATCCAAA	LOC_Os06g35760
OsAffx.15759.1.S1_at--442--137	1	Chr06:20863917..20863941 (25 bp)	AGAGCTGGCATATCCAAATCATCCA	LOC_Os06g35760
OsAffx.15759.1.S1_at--135--829	1	Chr06:20863923..20863947 (25 bp)	GGCATATCCAAATCATCCACTAACT	LOC_Os06g35760
OsAffx.15759.1.S1_at--983--55	1	Chr06:20863928..20863952 (25 bp)	ATCCAAATCATCCACTAACTACAAA	LOC_Os06g35760
OsAffx.15759.1.S1_at--582--53	1	Chr06:20863937..20863961 (25 bp)	ATCCACTAACTACAAAAGCAACTCT	LOC_Os06g35760
OsAffx.15759.1.S1_at--556--983	1	Chr06:20863947..20863971 (25 bp)	TACAAAAGCAACTCTAAGTATTTTT	LOC_Os06g35760
OsAffx.15759.1.S1_at--754--283	1	NONE	AAGTATTTTTAAGGTCAGCATGTTA	NONE
OsAffx.15759.1.S1_at--1--289	1	Chr06:20864795..20864818 (24 bp)	AAGGTCAGCATGTTAGGTGCACTAC	LOC_Os06g35760
OsAffx.15759.1.S1_at--221--339	1	Chr06:20864799..20864823 (25 bp)	CAGCATGTTAGGTGCACTACAGCGT	LOC_Os06g35760

Target Sequence

AATGCTGGGTCCTCCTAGAGCTGGCATATCCAAATCATCCACTAACTACAAAAGCAACTCTAAGTATTTTTAAGGTCAGC
ATGTTAGGTGCACTACAGCGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis