Browse Element(s) Details


OsAffx.15821.1.S1_at

Description tigr:9635.m03565
TID=OsAffx.15821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3607010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36010Os.10827.1.S1_x_at10/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010Os.46055.2.S1_x_at7/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_x_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36020NANA7+21549834..21550448hypothetical protein
LOC_Os07g36030OsAffx.25936.1.S1_s_at9/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.7.S1_s_at8/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.2.S1_x_at6/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.5.S1_x_at2/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36040OsAffx.28773.1.S1_at10/117+21557089..21557835Strictosidine synthase family protein
LOC_Os07g36050OsAffx.5546.1.S1_at11/117+21559823..21560332hypothetical protein
LOC_Os07g36060OsAffx.28773.1.S1_at4/117+21562362..21563417Strictosidine synthase family protein
LOC_Os07g36070OsAffx.15821.1.S1_at10/117+21564127..21567628hypothetical protein
LOC_Os07g36070OsAffx.16289.1.S1_x_at1/117+21564127..21567628hypothetical protein
LOC_Os07g36080Os.11078.1.S1_a_at11/117+21572752..21574339Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative, expressed
LOC_Os07g36090Os.52996.1.S1_at11/117+21574541..21577636ribosomal protein L28 containing protein, expressed
LOC_Os07g36100NANA7+21578258..21579010transposon protein, putative, unclassified
LOC_Os07g36110Os.54499.1.S1_at11/117+21581163..21582268expressed protein
LOC_Os07g36120OsAffx.28774.1.S1_at10/117+21585408..21587564hypothetical protein
LOC_Os07g36130Os.13874.4.S1_at8/117+21588126..21589281Histone H2A, putative, expressed
LOC_Os07g36140Os.12592.1.S1_at11/117+21590798..21591895Histone H2A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15821.1.S1_at--303--8113Chr03:25633055..25633074 (20 bp)
GGACGCCCGACAATGGCGGCATAAT
NONE
OsAffx.15821.1.S1_at--257--4691Chr09:4981471..4981886 (25 bp)
GCGGCGAAGTCCAGCCGGTGATTAA
NONE
OsAffx.15821.1.S1_at--991--4352Chr06:22789970..22790422 (25 bp)
CCAGCCGGTGATTAATGGGTGGCTT
NONE
OsAffx.15821.1.S1_at--764--6332Chr06:22790429..22790453 (25 bp)
GATGCGTGTTGCTGCATGGTCCTGT
NONE
OsAffx.15821.1.S1_at--116--5011Chr07:21564515..21564539 (25 bp)
GCATGGTCCTGTTGCATAGTCCTGT
LOC_Os07g36070
OsAffx.15821.1.S1_at--305--291Chr07:21564500..21564524 (25 bp)
ATAGTCCTGTCCATGCTGGTGACGT
LOC_Os07g36070
OsAffx.15821.1.S1_at--1104--612Chr06:22790469..22790493 (25 bp)
ATGCTGGTGACGTGCCATCGTCTCA
NONE
OsAffx.15821.1.S1_at--1084--9192Chr06:22790481..22790505 (25 bp)
TGCCATCGTCTCATTTGTCGGCCAT
NONE
OsAffx.15821.1.S1_at--378--731Chr07:21564453..21564477 (25 bp)
ATGTTGCCATTCGATCAAAGCCTTG
LOC_Os07g36070
OsAffx.15821.1.S1_at--9--1691Chr07:21564343..21564367 (25 bp)
AGCCATAGAAAATCGGGCGGTCCTC
LOC_Os07g36070
OsAffx.15821.1.S1_at--846--1931Chr07:21564186..21564210 (25 bp)
ACGGCTTTGGTGTCCATTAGCACGA
LOC_Os07g36070
Target Sequence 
GGACGCCCGACAATGGCGGCATAATAGGCCGGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGTCCAGCCGGTGA
TTAATGGGTGGCTTGAGGAGGATGCGTGTTGCTGCATGGTCCTGTTGCATAGTCCTGTCCATGCTGGTGACGTGCCATCG
TCTCATTTGTCGGCCATGTTGCCATTCGATCAAAGCCTTGTTGATGACGACGTTTTGTGCGCCATGGTAGCGATCGATGA
TGGCGCGGGCACAGTCCCCTGCGCAGGTCTAGCAGTAGATGTAGAAGCCATAGAAAATCGGGCGGTCCTCGCCGACGTTG
AAGCGGCAGAGGGAACAGATCCACGACTCCGGGAGGACGGCGGGGAGGGAGGCGACGCAGTCGTCGGAGCGGAGGAGGCG
GAGGTCGCAGTCGCGGGCGGCGTAGCAGCGTGCGCGGCCCCGACGGCTTTGGTGTCCATTAGCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis