Browse Element(s) Details


OsAffx.15868.1.S1_at

Description tigr:9634.m03933
TID=OsAffx.15868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4093011/11hypothetical protein
LOC_Os07g153501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40860OsAffx.28029.1.S1_at11/116+24368838..24371851pentatricopeptide, putative, expressed
LOC_Os06g40870OsAffx.15867.1.S1_at11/116+24372218..24374215expressed protein
LOC_Os06g40870Os.55285.1.S1_at10/116+24372218..24374215expressed protein
LOC_Os06g40880Os.49993.1.S1_at9/116+24378830..24381171Polygalacturonase family protein, expressed
LOC_Os06g40890Os.53450.1.S1_at11/116+24383028..24385067Exopolygalacturonase precursor, putative, expressed
LOC_Os06g40900NANA6+24385490..24387005retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40910Os.41883.1.S1_at1/116+24387284..24387874Cytidine and deoxycytidylate deaminase zinc-binding region family protein
LOC_Os06g40920OsAffx.28030.2.S1_x_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_s_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_x_at5/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.3.S1_at1/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40930OsAffx.15868.1.S1_at11/116+24395609..24396039hypothetical protein
LOC_Os06g40940Os.26642.1.S1_a_at11/116+24398549..24405053Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g40940OsAffx.23425.1.S1_at1/116+24398549..24405053Glycine dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15868.1.S1_at--35--5131Chr06:24395934..24395958 (25 bp)
GCACACGGTGAATGGACACTGTGTA
LOC_Os06g40930
OsAffx.15868.1.S1_at--876--7331Chr06:24395927..24395951 (25 bp)
GTGAATGGACACTGTGTAACGGTGT
LOC_Os06g40930
OsAffx.15868.1.S1_at--983--2571Chr06:24395750..24395911 (25 bp)
AACGGACTTCACGAGGTGCTTGTCG
LOC_Os06g40930
OsAffx.15868.1.S1_at--696--5691Chr06:24395746..24395907 (25 bp)
GACTTCACGAGGTGCTTGTCGACAT
LOC_Os06g40930
OsAffx.15868.1.S1_at--779--1871Chr06:24395740..24395761 (22 bp)
ACGAGGTGCTTGTCGACATGGTCCA
LOC_Os06g40930
OsAffx.15868.1.S1_at--895--3492Chr06:24395724..24395748 (25 bp)
CATGGTCCAGGAAGCATATATATGC
LOC_Os06g40930
OsAffx.15868.1.S1_at--998--8711Chr06:24395698..24395722 (25 bp)
TGTACTAGTAAAAATGTCCGTGTAT
LOC_Os06g40930
OsAffx.15868.1.S1_at--1046--2432Chr07:8856090..8856109 (20 bp)
AAAATGTCCGTGTATTGCAATGGGT
LOC_Os07g15350
OsAffx.15868.1.S1_at--507--8692Chr06:24395684..24395708 (25 bp)
TGTCCGTGTATTGCAATGGGTGAAA
LOC_Os06g40930
OsAffx.15868.1.S1_at--683--10491Chr06:24395655..24395679 (25 bp)
TTCAATTACAATATACGCTTTTCAT
LOC_Os06g40930
OsAffx.15868.1.S1_at--93--3192Chr11:14347720..14347744 (25 bp)
CAATATACGCTTTTCATGTATAATC
NONE
Target Sequence 
GCACACGGTGAATGGACACTGTGTAACGGTGTGGGAGAGATCTTTGCAACGGACTTCACGAGGTGCTTGTCGACATGGTC
CAGGAAGCATATATATGCATGTACTAGTAAAAATGTCCGTGTATTGCAATGGGTGAAAAATTTTCAATTACAATATACGC
TTTTCATGTATAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis