Browse Element(s) Details


OsAffx.15935.1.S1_at

Description tigr:9634.m04397
TID=OsAffx.15935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4532011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45290NANA6+27376785..27377475Pollen allergen family protein, expressed
LOC_Os06g45300Os.11751.1.S1_a_at11/116+27383308..27385860serine/threonine protein kinase, putative, expressed
LOC_Os06g45310OsAffx.5113.1.S1_at10/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310Os.51367.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310OsAffx.2442.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45320OsAffx.15935.1.S1_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45320OsAffx.15935.1.S1_x_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45330Os.17695.1.S1_at9/116+27396477..27399413Endonuclease V, putative, expressed
LOC_Os06g45340Os.47784.1.S1_at11/116+27401469..27402749FK506-binding protein, putative, expressed
LOC_Os06g45350Os.34343.1.S2_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S1_a_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.49575.1.S1_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S2_s_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45360Os.51301.1.S1_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360Os.51301.1.S1_x_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15935.1.S1_at--733--71Chr06:27395813..27395837 (25 bp)
ATTGCTGTAGCCATTGCTGCTCTCC
LOC_Os06g45320
OsAffx.15935.1.S1_at--22--9231Chr06:27395339..27395815 (25 bp)
TCCTTATCCCTTCAGGAGAGGGCAA
LOC_Os06g45320
OsAffx.15935.1.S1_at--454--9311Chr06:27395333..27395809 (25 bp)
TCCCTTCAGGAGAGGGCAAGTTCGT
LOC_Os06g45320
OsAffx.15935.1.S1_at--198--1071Chr06:27395321..27395345 (25 bp)
AGGGCAAGTTCGTGTGCCGAGGCAA
LOC_Os06g45320
OsAffx.15935.1.S1_at--704--9171Chr06:27395307..27395331 (25 bp)
TGCCGAGGCAAGTGCGAGGATATAC
LOC_Os06g45320
OsAffx.15935.1.S1_at--700--7291Chr06:27395296..27395320 (25 bp)
GTGCGAGGATATACGTGACTGCGAC
LOC_Os06g45320
OsAffx.15935.1.S1_at--530--6491Chr06:27395289..27395313 (25 bp)
GATATACGTGACTGCGACAACTGGT
LOC_Os06g45320
OsAffx.15935.1.S1_at--1161--9911Chr06:27395285..27395309 (25 bp)
TACGTGACTGCGACAACTGGTGCAA
LOC_Os06g45320
OsAffx.15935.1.S1_at--168--7371Chr06:27395282..27395306 (25 bp)
GTGACTGCGACAACTGGTGCAAGAC
LOC_Os06g45320
OsAffx.15935.1.S1_at--546--9151Chr06:27395277..27395301 (25 bp)
TGCGACAACTGGTGCAAGACGGCCG
LOC_Os06g45320
OsAffx.15935.1.S1_at--817--2751Chr06:27395262..27395286 (25 bp)
AAGACGGCCGGAGGCTACCCACAGG
LOC_Os06g45320
Target Sequence 
ATTGCTGTAGCCATTGCTGCTCTCCTTATCCCTTCAGGAGAGGGCAAGTTCGTGTGCCGAGGCAAGTGCGAGGATATACG
TGACTGCGACAACTGGTGCAAGACGGCCGGAGGCTACCCACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis