Browse Element(s) Details


OsAffx.15986.1.S1_at

Description tigr:9634.m04724
TID=OsAffx.15986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4855011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48520NANA6+29351932..29355138NB-ARC domain containing protein
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed
LOC_Os06g48540OsAffx.20823.2.S1_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48540OsAffx.20823.2.S1_x_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48550OsAffx.15986.1.S1_at11/116+29376998..29377953hypothetical protein
LOC_Os06g48560OsAffx.15987.1.S1_at11/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.20808.1.S1_x_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.15863.1.S1_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48570Os.24710.1.A1_s_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48570OsAffx.28173.1.S1_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48580Os.27639.1.S1_x_at8/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48580OsAffx.8980.1.S1_at6/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15986.1.S1_at--910--5351Chr06:29377046..29377070 (25 bp)
GAAGATGAAATCTGCAATGCCAAGA
LOC_Os06g48550
OsAffx.15986.1.S1_at--525--711Chr06:29377094..29377118 (25 bp)
ATGATGCTTGTGAGAGAGACTGGCT
LOC_Os06g48550
OsAffx.15986.1.S1_at--372--9411Chr06:29377565..29377589 (25 bp)
TCGTCGGCGCGATGCACTGCCTTTA
LOC_Os06g48550
OsAffx.15986.1.S1_at--526--6331Chr06:29377575..29377599 (25 bp)
GATGCACTGCCTTTACGTGTTGAGC
LOC_Os06g48550
OsAffx.15986.1.S1_at--562--3331Chr06:29377579..29377603 (25 bp)
CACTGCCTTTACGTGTTGAGCTGGG
LOC_Os06g48550
OsAffx.15986.1.S1_at--272--7591Chr06:29377627..29377651 (25 bp)
GGGCTAGTGAGGGTGATCCCTACAA
LOC_Os06g48550
OsAffx.15986.1.S1_at--1119--6131Chr06:29377635..29377657 (23 bp)
GAGGGTGATCCCTACAATGGAGGAT
LOC_Os06g48550
OsAffx.15986.1.S1_at--427--6291Chr06:29377810..29377834 (25 bp)
GATGATCCCAATTATCATGGCACGG
LOC_Os06g48550
OsAffx.15986.1.S1_at--750--411Chr06:29377823..29377847 (25 bp)
ATCATGGCACGGATTTTGTGGGTGT
LOC_Os06g48550
OsAffx.15986.1.S1_at--575--1651Chr06:29377865..29377889 (25 bp)
AGCGCAACGAGTACACCGACGAAGG
LOC_Os06g48550
OsAffx.15986.1.S1_at--52--1171Chr06:29377874..29377898 (25 bp)
AGTACACCGACGAAGGCAACAATGT
LOC_Os06g48550
Target Sequence 
GAAGATGAAATCTGCAATGCCAAGAGTGAAAGAGAGATGAAACATGTGATGATGCTTGTGAGAGAGACTGGCTTGCTTGT
GAGGCAGTGGCGAGAGCTCCTCGTCGGCGCGATGCACTGCCTTTACGTGTTGAGCTGGGGCGGCCTCGGCCTCGACTACG
AGGGGCTAGTGAGGGTGATCCCTACAATGGAGGATGATGATGATCCCAATTATCATGGCACGGATTTTGTGGGTGTGGGA
GAGGGAGAGGACGAGCGCAACGAGTACACCGACGAAGGCAACAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis