Browse Element(s) Details


OsAffx.15987.1.S1_at

Description tigr:9634.m04725
TID=OsAffx.15987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4856011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed
LOC_Os06g48540OsAffx.20823.2.S1_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48540OsAffx.20823.2.S1_x_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48550OsAffx.15986.1.S1_at11/116+29376998..29377953hypothetical protein
LOC_Os06g48560OsAffx.15987.1.S1_at11/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.20808.1.S1_x_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.15863.1.S1_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48570Os.24710.1.A1_s_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48570OsAffx.28173.1.S1_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48580Os.27639.1.S1_x_at8/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48580OsAffx.8980.1.S1_at6/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15987.1.S1_at--694--7771Chr06:29381180..29381204 (25 bp)
GGTGCTCTTGTTCGCGGTCAACGCA
LOC_Os06g48560
OsAffx.15987.1.S1_at--528--8791Chr06:29381188..29381212 (25 bp)
TGTTCGCGGTCAACGCACGGCCGCA
LOC_Os06g48560
OsAffx.15987.1.S1_at--439--1951Chr06:29381204..29381228 (25 bp)
ACGGCCGCACATCGGAGCCAAGGAC
LOC_Os06g48560
OsAffx.15987.1.S1_at--380--5891Chr06:29381334..29381358 (25 bp)
GAGCGGATACCGGAGGAACTCCTCC
LOC_Os06g48560
OsAffx.15987.1.S1_at--471--8171Chr06:29381348..29381372 (25 bp)
GGAACTCCTCCGGAACAAGCTGAGA
LOC_Os06g48560
OsAffx.15987.1.S1_at--653--6291Chr06:29381423..29381447 (25 bp)
GATGCACCGCCTGTACGTGTCGAGC
LOC_Os06g48560
OsAffx.15987.1.S1_at--276--8191Chr06:29381488..29381512 (25 bp)
GGAAGCCAGCCAGGGTGATACCCCG
LOC_Os06g48560
OsAffx.15987.1.S1_at--157--1691Chr06:29381495..29381519 (25 bp)
AGCCAGGGTGATACCCCGCATGGAG
LOC_Os06g48560
OsAffx.15987.1.S1_at--994--8811Chr06:29381503..29381527 (25 bp)
TGATACCCCGCATGGAGGTGACGGT
LOC_Os06g48560
OsAffx.15987.1.S1_at--52--1931Chr06:29381523..29381547 (25 bp)
ACGGTGATGCCGTCCTGCTTGCCAT
LOC_Os06g48560
OsAffx.15987.1.S1_at--340--7531Chr06:29381592..29381616 (25 bp)
GTGGCGTGGTGCGTGACGGACGAAC
LOC_Os06g48560
Target Sequence 
GGTGCTCTTGTTCGCGGTCAACGCACGGCCGCACATCGGAGCCAAGGACGGGTACTACGGCAACTGCATCACGCGGCAGG
TGGTGGCGTCCACGGCGGACGCGGTGGCGTACGGCGACATCGTCGACGTGGTGAAGCTCGTCAACGACGCCAAGGAGCGG
ATACCGGAGGAACTCCTCCGGAACAAGCTGAGAGGGAAGCAGGGCGTCGACGGCGGCGGCGGCGAGGGGCTCTTCGTCGG
CCCGATGCACCGCCTGTACGTGTCGAGCTGGGCGGGCCTCGGCCTCGACGGTATCGACTTCGGCGGCGGGAAGCCAGCCA
GGGTGATACCCCGCATGGAGGTGACGGTGATGCCGTCCTGCTTGCCATGCCTACCGTGCTCGAGGTCGAACGGCAGCGAC
GGCGTGAACGCGGTGGCGTGGTGCGTGACGGACGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis