Browse Element(s) Details


OsAffx.15994.1.S1_x_at

Description tigr:9634.m04789
TID=OsAffx.15994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=uncharacterized plant-specific domain TIGR01589, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4918011/11uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os02g098002/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed
LOC_Os06g49160Os.22683.1.S1_at10/116+29788100..29789677thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os06g49170NANA6+29790165..29794255Calcium binding EGF domain containing protein
LOC_Os06g49180Os.7717.1.S1_a_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49180OsAffx.15994.1.S1_x_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49190Os.11169.1.S1_a_at11/116+29806826..29807453nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os06g49200Os.25325.1.A1_at11/116+29807496..29810844CUE domain containing protein, expressed
LOC_Os06g49210OsAffx.24931.1.S1_x_at1/116+29813605..29820248retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49220Os.49996.1.S1_at10/116+29823395..29825693POT family protein, expressed
LOC_Os06g49220OsAffx.24931.1.S1_x_at1/116+29823395..29825693POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15994.1.S1_x_at--699--1291Chr06:29798234..29798258 (25 bp)
AGAGTCTACTCCGATGCCTGCAATG
LOC_Os06g49180
OsAffx.15994.1.S1_x_at--367--111Chr06:29798122..29798146 (25 bp)
ATTCAGGGCCTTCATAGTAGCATGG
LOC_Os06g49180
OsAffx.15994.1.S1_x_at--250--7991Chr06:29798099..29798123 (25 bp)
GGATGCTTCCAATTTGCTTCCAGTG
LOC_Os06g49180
OsAffx.15994.1.S1_x_at--523--5271Chr06:29798072..29798096 (25 bp)
GAATGCTAATTCTGTGCTGTTTGGT
LOC_Os06g49180
OsAffx.15994.1.S1_x_at--387--10311Chr06:29797988..29798012 (25 bp)
TTTCTGCGGGAATGCTTTCCTGGAA
LOC_Os06g49180
OsAffx.15994.1.S1_x_at--657--7732Chr02:5057532..5057556 (25 bp)
GGTGGATCCTTTAGCAGTTCAGAGT
LOC_Os02g09800
OsAffx.15994.1.S1_x_at--43--2971Chr06:29797909..29797933 (25 bp)
AATGGGCAACCTCTGGATGATTCAA
LOC_Os06g49180
OsAffx.15994.1.S1_x_at--1123--8991Chr06:29797874..29797898 (25 bp)
TGAATCATCATCGTTTGGCTTCTTG
LOC_Os06g49180
OsAffx.15994.1.S1_x_at--953--10732Chr02:5057601..5057623 (23 bp)
TTGAGTCAGCTTCCCCGAAATTTTT
LOC_Os02g09800
OsAffx.15994.1.S1_x_at--426--3171Chr06:29797679..29797703 (25 bp)
CAATTATGGCAAGTCACCGTTCCTC
LOC_Os06g49180
OsAffx.15994.1.S1_x_at--59--4031Chr06:29797662..29797686 (25 bp)
CGTTCCTCCCTTCTGAGCAAAATAA
LOC_Os06g49180
Target Sequence 
AGAGTCTACTCCGATGCCTGCAATGCCAGATGATGTAATGTGCAATGGAAATTCCAGTGGCATAGTAGATCGCACACAAT
CCAGCGATCAATTAATTTATGCTGGTAAAGACATTCAGGGCCTTCATAGTAGCATGGATGCTTCCAATTTGCTTCCAGTG
CAGAATGCTAATTCTGTGCTGTTTGGTGTGGAAAATGGGACGACTATTAAGACGGAATCAGGCTATTCGAGCAATGGTAA
TTTTGGTTTCTGCGGGAATGCTTTCCTGGAATCATGCCAGTCAATAGGTGATGCATCTGGTGGATCCTTTAGCAGTTCAG
AGTTGAATGGGCAACCTCTGGATGATTCAATTTTGGATATTGAATCATCATCGTTTGGCTTCTTGAGTCAGCTTCCCCGA
AATTTTTTTTCAGACCTACCAGAGGATTTCAGTCAAAGCACAGAAATATTAGACAATTATGGCAAGTCACCGTTCCTCCC
TTCTGAGCAAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15994.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis