Browse Element(s) Details


OsAffx.16030.1.S1_at

Description tigr:9635.m00047
TID=OsAffx.16030.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA directed RNA polymerase, 7 kDa subunit, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0145011/11DNA directed RNA polymerase, 7 kDa subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01430OsAffx.22848.4.S1_at2/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.4.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.3.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01440Os.7088.1.S1_at11/117+289331..290324Plastocyanin-like domain containing protein, expressed
LOC_Os07g01450OsAffx.16030.1.S1_at11/117+290941..292865DNA directed RNA polymerase, 7 kDa subunit family protein, expressed
LOC_Os07g01460Os.31269.1.S1_at11/117+298003..299724expressed protein
LOC_Os07g01470NANA7+301163..301648expressed protein
LOC_Os07g01480Os.27830.1.S1_at11/117+304308..305321Oxygen evolving enhancer protein 3 containing protein, expressed
LOC_Os07g01490Os.14671.1.S1_at11/117+305336..308043Kinesin-1, putative, expressed
LOC_Os07g01500NANA7+311964..317734retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16030.1.S1_at--721--811Chr07:292737..292761 (25 bp)
ATGGATCCTCAGCAGCCGAAACCCG
LOC_Os07g01450
OsAffx.16030.1.S1_at--796--1651Chr07:292724..292748 (25 bp)
AGCCGAAACCCGTCAGCTATCTATG
LOC_Os07g01450
OsAffx.16030.1.S1_at--734--4871Chr07:292249..292733 (25 bp)
GCTATCTATGCACAGATTGTGGAAC
LOC_Os07g01450
OsAffx.16030.1.S1_at--773--1251Chr07:292236..292260 (25 bp)
AGATTGTGGAACTGAGACCTTACTC
LOC_Os07g01450
OsAffx.16030.1.S1_at--94--6011Chr07:292223..292247 (25 bp)
GAGACCTTACTCAAACCGACTGATG
LOC_Os07g01450
OsAffx.16030.1.S1_at--895--5831Chr07:292221..292245 (25 bp)
GACCTTACTCAAACCGACTGATGTT
LOC_Os07g01450
OsAffx.16030.1.S1_at--885--2611Chr07:292210..292234 (25 bp)
AACCGACTGATGTTGTCCAGTGCCA
LOC_Os07g01450
OsAffx.16030.1.S1_at--692--8711Chr07:292175..292199 (25 bp)
TGTCGCATCCTCTGCAAGAAGCGAA
LOC_Os07g01450
OsAffx.16030.1.S1_at--63--3851Chr07:292164..292188 (25 bp)
CTGCAAGAAGCGAACCCGCCAAGGT
LOC_Os07g01450
OsAffx.16030.1.S1_at--856--6111Chr07:291146..291170 (25 bp)
GAGGGAATGGACACATTTGCTAGCT
LOC_Os07g01450
OsAffx.16030.1.S1_at--1093--2951Chr07:291141..291165 (25 bp)
AATGGACACATTTGCTAGCTATTAC
LOC_Os07g01450
Target Sequence 
ATGGATCCTCAGCAGCCGAAACCCGTCAGCTATCTATGCACAGATTGTGGAACTGAGACCTTACTCAAACCGACTGATGT
TGTCCAGTGCCATGAATGTGGCTGTCGCATCCTCTGCAAGAAGCGAACCCGCCAAGGTNNTNTNNNNGANNANNGNNNNN
NNANNNNNCAATATGTTTTGTTCAGTATGAAGCGCGCTGAAGATGAGGGAATGGACACATTTGCTAGCTATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis