Browse Element(s) Details


OsAffx.16049.1.S1_at

Description tigr:9635.m00160
TID=OsAffx.16049.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acetyltransferase, GNAT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0254011/11acetyltransferase, GNAT family protein, expressed
LOC_Os02g084001/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02510OsAffx.19542.3.S1_x_at7/117+878723..882945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02520OsAffx.21076.1.S1_at11/117+893613..895976hypothetical protein
LOC_Os07g02530OsAffx.21075.1.S1_at9/117+897399..898078hypothetical protein
LOC_Os07g02540OsAffx.16049.1.S1_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.16049.1.S1_x_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.3615.1.S1_s_at1/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02550NANA7+916698..917609hypothetical protein
LOC_Os07g02560OsAffx.21075.2.S1_at11/117+918200..919735NB-ARC domain containing protein
LOC_Os07g02570Os.35752.2.S1_x_at11/117+923605..925137NB-ARC domain containing protein
LOC_Os07g02580Os.35752.3.S1_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02580Os.35752.3.S1_x_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02590Os.18548.1.S1_x_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.34986.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.18548.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02600Os.46785.2.S1_x_at3/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.30226.2.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.442.1.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009640biological_processphotomorphogenesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16049.1.S1_at--222--7731Chr07:908322..908346 (25 bp)
GGTGGCCAGCCTGTGGAACTGCAAA
LOC_Os07g02540
OsAffx.16049.1.S1_at--450--7551Chr07:908321..908345 (25 bp)
GTGGCCAGCCTGTGGAACTGCAAAG
LOC_Os07g02540
OsAffx.16049.1.S1_at--173--8451Chr07:908319..908343 (25 bp)
GGCCAGCCTGTGGAACTGCAAAGAC
LOC_Os07g02540
OsAffx.16049.1.S1_at--802--4471Chr07:908314..908338 (25 bp)
GCCTGTGGAACTGCAAAGACGCGTT
LOC_Os07g02540
OsAffx.16049.1.S1_at--161--8511Chr07:908309..908333 (25 bp)
TGGAACTGCAAAGACGCGTTCCGCC
LOC_Os07g02540
OsAffx.16049.1.S1_at--286--5471Chr07:908307..908331 (25 bp)
GAACTGCAAAGACGCGTTCCGCCTC
LOC_Os07g02540
OsAffx.16049.1.S1_at--473--7531Chr07:908211..908235 (25 bp)
GTGGCTGGGCATCCCGTCCATCCCG
LOC_Os07g02540
OsAffx.16049.1.S1_at--245--4051Chr07:908188..908212 (25 bp)
CGAACCTGTTCGAGCCGTTCGGCCT
LOC_Os07g02540
OsAffx.16049.1.S1_at--1120--8791Chr07:908182..908206 (25 bp)
TGTTCGAGCCGTTCGGCCTCCACTT
LOC_Os07g02540
OsAffx.16049.1.S1_at--236--4732Chr02:4482741..4483233 (25 bp)
GCTGTTCCGGCACGCCCACAACGTG
LOC_Os02g08400
OsAffx.16049.1.S1_at--601--8431Chr07:908055..908079 (25 bp)
GGCCACCGAGGTGGGCGCGTGCGAG
LOC_Os07g02540
Target Sequence 
GGTGGCCAGCCTGTGGAACTGCAAAGACGCGTTCCGCCTCGAGGTGCGCGGCGCGCCGCGGCTGTGGCGCGCGGCCGCCC
GCGCGACGCGCGCCGCCGACCGCGCCGCGCCGTGGCTGGGCATCCCGTCCATCCCGAACCTGTTCGAGCCGTTCGGCCTC
CACTTCGTCTACGGCCTCGGCGGCGGCGGCCCCGCGGCGGCGCGCATGGCGCGGGCGCTGTTCCGGCACGCCCACAACGT
GGCGCGGCGCGGCGGGGCGCGCGTGGTGGCCACCGAGGTGGGCGCGTGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis