Browse Element(s) Details


OsAffx.1609.1.A1_x_at

Description gb:NM_185045.1
DB_XREF= gi:34897175
TID=OsAffx.1609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0052F07.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g419101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41870Os.55122.1.S1_at10/115+24435620..24436534expressed protein
LOC_Os05g41880NANA5+24439704..24449084MutS domain V family protein, expressed
LOC_Os05g41890OsAffx.27280.1.S1_at11/115+24450020..24452523expressed protein
LOC_Os05g41890OsAffx.27097.1.S1_at1/115+24450020..24452523expressed protein
LOC_Os05g41900Os.7715.1.S1_a_at11/115+24454593..24456729Protein translation factor SUI1 homolog, putative, expressed
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein
LOC_Os05g41920OsAffx.15064.1.S1_at11/115+24467975..24468640expressed protein
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1609.1.A1_x_at--425--3751Chr03:33260207..33260231 (25 bp)
CTGGCCGCCGACGTTGTTGCCGTAG
NONE
OsAffx.1609.1.A1_x_at--376--4151Chr03:33260202..33260226 (25 bp)
CGCCGACGTTGTTGCCGTAGGTGCA
NONE
OsAffx.1609.1.A1_x_at--388--5771Chr03:33260198..33260222 (25 bp)
GACGTTGTTGCCGTAGGTGCAGTTC
NONE
OsAffx.1609.1.A1_x_at--684--4031Chr03:33260196..33260220 (25 bp)
CGTTGTTGCCGTAGGTGCAGTTCGA
NONE
OsAffx.1609.1.A1_x_at--316--6651Chr03:33260195..33260219 (25 bp)
GTTGTTGCCGTAGGTGCAGTTCGAC
NONE
OsAffx.1609.1.A1_x_at--909--10771Chr03:33260194..33260218 (25 bp)
TTGTTGCCGTAGGTGCAGTTCGACG
NONE
OsAffx.1609.1.A1_x_at--703--6931Chr03:33260186..33260210 (25 bp)
GTAGGTGCAGTTCGACGGCTGCGAC
NONE
OsAffx.1609.1.A1_x_at--799--1211Chr03:33260178..33260202 (25 bp)
AGTTCGACGGCTGCGACGACGCGTT
NONE
OsAffx.1609.1.A1_x_at--255--9151Chr03:33260167..33260191 (25 bp)
TGCGACGACGCGTTGGTGCCGGTGC
NONE
OsAffx.1609.1.A1_x_at--55--9312Chr05:24460796..24461010 (25 bp)
TCCCGCCACCGGAGGTGAGGAAGAT
LOC_Os05g41910
OsAffx.1609.1.A1_x_at--543--1771Chr03:33260048..33260072 (25 bp)
ACCGGAGGTGAGGAAGATGGCAACA
NONE
Target Sequence 
CTGGCCGCCGACGTTGTTGCCGTAGGTGCAGTTCGACGGCTGCGACGACGCGTTGGTGCCGGTGCCGGTGCCGGCCAGCT
CCACCGCCACGGCGGCCGGCGGCGCGCCGGCGCCGCCCACCGCCGTCGGCCGCGCCGCCGTGCTGCTCATCCTCCCGCCA
CCGGAGGTGAGGAAGATGGCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1609.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis