Browse Element(s) Details


OsAffx.16098.1.S1_at

Description tigr:9635.m00489
TID=OsAffx.16098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0551010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05470Os.18700.1.S1_at11/117+2537720..2543969leucine-rich repeat family protein, putative, expressed
LOC_Os07g05480Os.12056.1.S1_at11/117+2544727..2545713Photosystem I reaction center subunit psaK, chloroplast precursor, putative, expressed
LOC_Os07g05490NANA7+2559634..2562042transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05500OsAffx.28291.1.S1_at10/117+2563740..2565574hypothetical protein
LOC_Os07g05500Os.4779.1.S1_at1/117+2563740..2565574hypothetical protein
LOC_Os07g05510OsAffx.16098.1.S1_at10/117+2567834..2568853hypothetical protein
LOC_Os07g05520OsAffx.5221.1.S1_at9/117+2574494..2576913hypothetical protein
LOC_Os07g05530OsAffx.16099.1.S1_at11/117+2578517..2579311hypothetical protein
LOC_Os07g05540OsAffx.5954.4.S1_x_at4/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.1.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.5.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.3.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.2.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.25503.1.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16098.1.S1_at--881--4151NONE
CGCCCCTCAGGCTAAGGGTAAGCTT
NONE
OsAffx.16098.1.S1_at--478--9771Chr07:2568132..2568156 (25 bp)
TAAGGGTAAGCTTAGCAGCACTGCT
LOC_Os07g05510
OsAffx.16098.1.S1_at--46--1071Chr07:2568130..2568154 (25 bp)
AGGGTAAGCTTAGCAGCACTGCTAC
LOC_Os07g05510
OsAffx.16098.1.S1_at--754--9791Chr07:2568126..2568150 (25 bp)
TAAGCTTAGCAGCACTGCTACTGCC
LOC_Os07g05510
OsAffx.16098.1.S1_at--775--10451Chr07:2568121..2568145 (25 bp)
TTAGCAGCACTGCTACTGCCCAAGA
LOC_Os07g05510
OsAffx.16098.1.S1_at--914--5051Chr07:2568118..2568142 (25 bp)
GCAGCACTGCTACTGCCCAAGATGG
LOC_Os07g05510
OsAffx.16098.1.S1_at--5--4391Chr07:2568102..2568126 (25 bp)
CCAAGATGGCACTCCAGTTCCTGGA
LOC_Os07g05510
OsAffx.16098.1.S1_at--1016--6231Chr07:2568098..2568122 (25 bp)
GATGGCACTCCAGTTCCTGGAGAGG
LOC_Os07g05510
OsAffx.16098.1.S1_at--161--6031Chr07:2567940..2568103 (25 bp)
GAGAGGGCAGGCGCATACTTGAACA
LOC_Os07g05510
OsAffx.16098.1.S1_at--326--7611Chr07:2567887..2567911 (25 bp)
GGGAAGCTGATGTGGTATGAAATCA
LOC_Os07g05510
OsAffx.16098.1.S1_at--606--4751Chr07:2567882..2567906 (25 bp)
GCTGATGTGGTATGAAATCATTGGC
LOC_Os07g05510
Target Sequence 
CGCCCCTCAGGCTAAGGGTAAGCTTAGCAGCACTGCTACTGCCCAAGATGGCACTCCAGTTCCTGGAGAGGGCAGGCGCA
TACTTGAACAGATTATGGAAGAAGGGGACAAGCGCCAGGGGAAGCTGATGTGGTATGAAATCATTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis