Browse Element(s) Details


OsAffx.16145.1.S1_s_at

Description tigr:9635.m00738
TID=OsAffx.16145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0789011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07830NANA7+3929837..3932091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07840NANA7+3932362..3935160retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07850NANA7+3936309..3936518hypothetical protein
LOC_Os07g07860OsAffx.28337.1.S1_at9/117+3946445..3947647Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07870OsAffx.5247.1.S1_at11/117+3949100..3949881Protease inhibitor/seed storage/LTP family protein
LOC_Os07g07880Os.47739.1.S1_at11/117+3951283..3953194expressed protein
LOC_Os07g07890OsAffx.16145.1.S1_s_at11/117+3955666..3955881hypothetical protein
LOC_Os07g07900Os.9276.1.S1_s_at11/117+3956280..3958938expressed protein
LOC_Os07g07900Os.52184.1.S1_at10/117+3956280..3958938expressed protein
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07930Os.7242.1.S1_at11/117+3978511..3979560Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16145.1.S1_s_at--548--3931Chr07:3955766..3955790 (25 bp)
CGGCGCTGCGCAAGTGCCTCGAGGA
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--545--5971Chr07:3955789..3955813 (25 bp)
GAGAACAAGGGCGACCGCTCCAAGT
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--450--1431Chr07:3955790..3955814 (25 bp)
AGAACAAGGGCGACCGCTCCAAGTG
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--306--5511Chr07:3955791..3955815 (25 bp)
GAACAAGGGCGACCGCTCCAAGTGC
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--978--3211Chr07:3955794..3955818 (25 bp)
CAAGGGCGACCGCTCCAAGTGCCAG
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--842--2871Chr07:3955795..3955819 (25 bp)
AAGGGCGACCGCTCCAAGTGCCAGG
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--413--1091Chr07:3955796..3955820 (25 bp)
AGGGCGACCGCTCCAAGTGCCAGGA
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--1109--4771Chr07:3955805..3955829 (25 bp)
GCTCCAAGTGCCAGGACCACATCGA
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--869--2851Chr07:3955810..3955834 (25 bp)
AAGTGCCAGGACCACATCGACGCCT
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--1007--1131Chr07:3955811..3955835 (25 bp)
AGTGCCAGGACCACATCGACGCCTT
LOC_Os07g07890
OsAffx.16145.1.S1_s_at--796--7271Chr07:3955812..3955836 (25 bp)
GTGCCAGGACCACATCGACGCCTTC
LOC_Os07g07890
Target Sequence 
CGGCGCTGCGCAAGTGCCTCGAGGAGAACAAGGGCGACCGCTCCAAGTGCCAGGACCACATCGACGCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16145.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis