Browse Element(s) Details


OsAffx.16320.1.S1_at

Description tigr:9635.m01825
TID=OsAffx.16320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1811011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18070Os.50491.1.S1_at10/117+10691581..10692164expressed protein
LOC_Os07g18080NANA7+10694155..10697460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.14491.2.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.47463.1.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18100OsAffx.31780.3.S1_at9/117+10708905..10711013hypothetical protein
LOC_Os07g18100OsAffx.31780.2.S1_x_at1/117+10708905..10711013hypothetical protein
LOC_Os07g18110OsAffx.16320.1.S1_at11/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.30891.1.S1_x_at3/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.12244.1.S1_at1/117+10714746..10716928hypothetical protein
LOC_Os07g18120Os.18981.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.18981.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.57307.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_x_at4/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.2.S1_x_at2/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.50754.1.A1_x_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18130OsAffx.28502.1.S1_at11/117+10737453..10742218hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16320.1.S1_at--381--7211Chr07:10715038..10715062 (25 bp)
GTCGTCATCGCGTCGCTTGGGCCGA
LOC_Os07g18110
OsAffx.16320.1.S1_at--1123--5851Chr07:10715110..10715247 (25 bp)
GAGCCAGCGGCAACACTACACAGAA
LOC_Os07g18110
OsAffx.16320.1.S1_at--121--4451Chr07:10715537..10715561 (25 bp)
GCCTAGAGATCCAAGCCCGACAGAT
LOC_Os07g18110
OsAffx.16320.1.S1_at--422--5651Chr07:10715555..10715579 (25 bp)
GACAGATCCAAGTCCGACCTGATTC
LOC_Os07g18110
OsAffx.16320.1.S1_at--682--4211Chr07:10715579..10715603 (25 bp)
CCGCGCCCTTGCATGGTGAGAATAA
LOC_Os07g18110
OsAffx.16320.1.S1_at--206--5191Chr07:10715606..10715630 (25 bp)
GCAATGGTTTTGGTTGTGAGTCAGA
LOC_Os07g18110
OsAffx.16320.1.S1_at--975--8431Chr07:10715637..10715661 (25 bp)
GGCCAGGCTGGCACTATGTGAGTCA
LOC_Os07g18110
OsAffx.16320.1.S1_at--840--6091Chr07:10715656..10715680 (25 bp)
GAGTCAGCTCTCTGCCGAACAAAGA
LOC_Os07g18110
OsAffx.16320.1.S1_at--441--10572Chr07:10715775..10715799 (25 bp)
TTCTCAGCAATGACGCCGAAATCCT
LOC_Os07g18110
OsAffx.16320.1.S1_at--131--7191Chr07:10716810..10716834 (25 bp)
GTCGGTATTACCCACCAACTGCCAT
LOC_Os07g18110
OsAffx.16320.1.S1_at--444--2632Chr07:10716863..10716887 (25 bp)
AACCTGGATCGAACGACGCTGCGGA
LOC_Os07g18110
Target Sequence 
GTCGTCATCGCGTCGCTTGGGCCGAGGGGACGAGCCGTCGAGGGGAGCGCCGCCGGGGACAACGGAAGAGCGGAGCCAGC
GGCAACACTACACAGAAACCTAATGTTAGGGGCATGGAAGGGATCAACGGTAAAACTGAGAGGTATAGAAGGGAGCGTGC
AAAATTGGAGGAGCTAGGCCTAGAGATCCAAGCCCGACAGATCCAAGTCCGACCTGATTCCGCGCCCTTGCATGGTGAGA
ATAATGGCAATGGTTTTGGTTGTGAGTCAGAAACAATGGCCAGGCTGGCACTATGTGAGTCAGCTCTCTGCCGAACAAAG
ACGAAGCTACGGGAAAATATAATTCTCAGCAATGACGCCGAAATCCTCATGCTTGAGAATGACAGTTGTGACGGTTGGAA
AGGTCGGTATTACCCACCAACTGCCATTGGGGAATCATCTCAGCCGTCCAGGAGAAACCTGGATCGAACGACGCTGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis