Browse Element(s) Details


OsAffx.16377.1.S1_x_at

Description gb:NM_188168.1
DB_XREF= gi:34903419
GEN=OSJNBa0077F02.20
TID=OsAffx.16377.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 1, P0678F11.16 (OSJNBa0077F02.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2319011/11lysine ketoglutarate reductase trans-splicing related 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified
LOC_Os07g23230NANA7+13092773..13094141hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16377.1.S1_x_at--734--6991Chr07:13071186..13071210 (25 bp)
GTACGACTACATCTTCCTGTGGGAC
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--238--8331Chr07:13071304..13071328 (25 bp)
GGCTCGGAGATCCACCACGGCATCA
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--598--9031Chr07:13071374..13071398 (25 bp)
TGCACCGGCGGTTCTACAGGCGAGC
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--1121--4991Chr07:13071500..13071524 (25 bp)
GCATGGTGCAGAACGATCTCGTCCA
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--960--3411Chr07:13071508..13071532 (25 bp)
CAGAACGATCTCGTCCACGGGTGGG
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--920--2211Chr07:13071542..13071566 (25 bp)
ACAAGCTCGGCTACTGCGCGCAGGG
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--486--4571Chr07:13071557..13071581 (25 bp)
GCGCGCAGGGCGACCGGACGATGAA
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--57--5651Chr07:13071595..13071619 (25 bp)
GACAGCGAGTACGTCATGCACAGGG
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--522--6371Chr07:13071686..13071710 (25 bp)
GATCCTTCGCCGAGATGCAGATATT
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--519--10631Chr07:13071691..13071715 (25 bp)
TTCGCCGAGATGCAGATATTCAACC
LOC_Os07g23190
OsAffx.16377.1.S1_x_at--706--11Chr07:13071708..13071732 (25 bp)
ATTCAACCGGAGATGGAAGGAGGCC
LOC_Os07g23190
Target Sequence 
GTACGACTACATCTTCCTGTGGGACGAGGACGTCGAGGTCGACGCCTTCGACCCCGCCCGCTACCTCGCCATCGTCAGGA
GGGAGGGGCTCGAGGTCTCGCAGCCGGCGCTGGCGCGCGGCTCGGAGATCCACCACGGCATCACCGCCCGACAAACCGTG
GCCGGAGGAGGAGGAGAAGGTGGCGACGTGCACCGGCGGTTCTACAGGCGAGCCAGGCCGCGGTGCGACGAGGGCAGCAC
GGCGCCGCCGTGCACGGGGTGGGTCGAGAGGATGGTGCCGGTGTTCTCCCGCGCGGCGTGGCGGTGCACCTGGGGCATGG
TGCAGAACGATCTCGTCCACGGGTGGGGCCTCGACTACAAGCTCGGCTACTGCGCGCAGGGCGACCGGACGATGAAGGTC
GGCGTCGTCGACAGCGAGTACGTCATGCACAGGGGCATCCCCTCGCTCGGCGGCGGCGGCGGGTGGTCGGCGTCGGCCGG
CCGGATCGCGGTGAGGCGGCGATCCTTCGCCGAGATGCAGATATTCAACCGGAGATGGAAGGAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16377.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis