Browse Element(s) Details


OsAffx.16387.1.S1_x_at

Description tigr:9635.m02283
TID=OsAffx.16387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2394410/11Glycosyl hydrolases family 31 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23890OsAffx.5421.1.S1_at11/117+13507791..13509083F-box domain containing protein
LOC_Os07g23900Os.53238.1.S1_at11/117+13511942..13514082F-box domain containing protein, expressed
LOC_Os07g23910NANA7+13515302..13515514hypothetical protein
LOC_Os07g23920Os.47463.1.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23920Os.14491.2.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23944Os.50392.1.S1_at11/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_x_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.11458.1.S1_s_at1/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23960OsAffx.28561.1.S1_at11/117+13554489..13556567Transferase family protein
LOC_Os07g23970OsAffx.5423.1.S1_at11/117+13565490..13566086expressed protein
LOC_Os07g23980Os.26542.1.A1_at11/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23980OsAffx.25367.1.S1_at1/117+13571774..13575459retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16387.1.S1_x_at--92--2431Chr07:13534218..13534242 (25 bp)
AAAAGAATCCTGATGCTAGGTGAGA
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--489--4271Chr07:13534226..13534250 (25 bp)
CCTGATGCTAGGTGAGAGTAACTTC
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--1091--6311Chr07:13534229..13534253 (25 bp)
GATGCTAGGTGAGAGTAACTTCGGT
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--868--7751Chr07:13534236..13534260 (25 bp)
GGTGAGAGTAACTTCGGTGTGATCA
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--277--7011Chr07:13534243..13534267 (25 bp)
GTAACTTCGGTGTGATCAGGTTTAA
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--837--1951Chr07:13534246..13534270 (25 bp)
ACTTCGGTGTGATCAGGTTTAAAAT
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--1044--3231Chr07:13534274..13534298 (25 bp)
CATAAATTCAGGACCAAAACTGGTT
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--227--11Chr07:13534279..13534303 (25 bp)
ATTCAGGACCAAAACTGGTTAGTAT
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--684--10051NONE
TAGTATAACTAAGACATCCAAGCCG
NONE
OsAffx.16387.1.S1_x_at--78--1551Chr07:13534924..13534948 (25 bp)
ACGTTCTAGTCCTCGACAGTCGACA
LOC_Os07g23944
OsAffx.16387.1.S1_x_at--525--5851Chr07:13535174..13535198 (25 bp)
GACCAGGCCTCGTTCACGTATGAGC
LOC_Os07g23944
Target Sequence 
AAAAGAATCCTGATGCTAGGTGAGAGTAACTTCGGTGTGATCAGGTTTAAAATGAACATAAATTCAGGACCAAAACTGGT
TAGTATAACTAAGACATCCAAGCCGCTGGTCGCGGCCTCATCGGACACCGCCGCGGTGGCGCCGCCTCCTCCTGCGGCTC
CACGTTCTAGTCCTCGACAGTCGACATCGGGCTGGCGCGGCGGCGGTGAGGGCGGCGAGGGCGCGGGTGCGGCACGGCAG
AGCGGGCACGACGCGGGTGTCCGCGGTGACGGCGGCGAGAGCGGCGACGGCGCGGGCAGAGAGCGCGGCGCGGCAGGAGC
TGGAGCAGCGCTGCGTGACGGCAAGGCGTGCGCCTGCTACGACATTGCGCTGCTGCTGCTGTGCGCGGTCGGCGTCATCA
GGGCCATCGACGACCAGGCCTCGTTCACGTATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16387.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis