Browse Element(s) Details


OsAffx.16445.1.S1_at

Description tigr:9635.m02700
TID=OsAffx.16445.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2785010/11C2 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27820OsAffx.20354.1.S1_at3/117+16233830..16236759retrotransposon protein, putative, unclassified
LOC_Os07g27834Os.46610.1.A1_x_at2/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.3347.1.S1_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.27810.1.S1_x_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27850OsAffx.16445.1.S1_at10/117+16257634..16260440C2 domain-containing protein, putative
LOC_Os07g27850Os.13577.1.S1_at1/117+16257634..16260440C2 domain-containing protein, putative
LOC_Os07g27860OsAffx.5466.1.S1_at11/117+16261482..16262043hypothetical protein
LOC_Os07g27870Os.53668.1.S1_at10/117+16263027..16264845thioesterase family protein, expressed
LOC_Os07g27880OsAffx.28637.2.S1_at11/117+16271312..16272793O-methyltransferase family protein
LOC_Os07g27880OsAffx.28637.1.S1_x_at8/117+16271312..16272793O-methyltransferase family protein
LOC_Os07g27890OsAffx.5467.1.S1_x_at11/117+16273695..16274697hypothetical protein
LOC_Os07g27900NANA7+16276843..16279693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27910NANA7+16281032..16281547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27920OsAffx.28634.1.S1_at11/117+16282620..16282928hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16445.1.S1_at--790--7291Chr07:16257691..16257715 (25 bp)
GTGCGAGGGACCAATCTTGCCGTCC
LOC_Os07g27850
OsAffx.16445.1.S1_at--715--431Chr07:16257704..16257728 (25 bp)
ATCTTGCCGTCCGTGATGTCTTCAG
LOC_Os07g27850
OsAffx.16445.1.S1_at--622--7251Chr07:16257712..16257736 (25 bp)
GTCCGTGATGTCTTCAGCAGCGATC
LOC_Os07g27850
OsAffx.16445.1.S1_at--211--771Chr07:16257719..16257743 (25 bp)
ATGTCTTCAGCAGCGATCCCTACGT
LOC_Os07g27850
OsAffx.16445.1.S1_at--769--9691NONE
TCAAGCTCGGCAACCAGGAGGTCTA
NONE
OsAffx.16445.1.S1_at--404--5151Chr07:16260111..16260130 (20 bp)
GCAACCAGGAGGTCTACGACCGTGA
LOC_Os07g27850
OsAffx.16445.1.S1_at--322--9531Chr07:16260118..16260142 (25 bp)
TCTACGACCGTGACCCGTTCGTCGA
LOC_Os07g27850
OsAffx.16445.1.S1_at--13--9371Chr07:16260139..16260163 (25 bp)
TCGACGACCCCATGGGCGCGGCGTT
LOC_Os07g27850
OsAffx.16445.1.S1_at--1052--791Chr07:16260150..16260174 (25 bp)
ATGGGCGCGGCGTTCTTCGAGCTCC
LOC_Os07g27850
OsAffx.16445.1.S1_at--699--8951Chr07:16260230..16260254 (25 bp)
TGACAGTAAAGAGGACGGCACCGCC
LOC_Os07g27850
OsAffx.16445.1.S1_at--147--4771Chr07:16260359..16260383 (25 bp)
GCTGCAGCTGGAACTGGAATGGCAC
LOC_Os07g27850
Target Sequence 
GTGCGAGGGACCAATCTTGCCGTCCGTGATGTCTTCAGCAGCGATCCCTACGTCGTCCTCAAGCTCGGCAACCAGGAGGT
CTACGACCGTGACCCGTTCGTCGACGACCCCATGGGCGCGGCGTTCTTCGAGCTCCGGCCGCTGGTGGAGGCGGCCGCGG
CGAGCAGCCGCCGCCGTACCCCCTCCGGCGTTGACAGTAAAGAGGACGGCACCGCCGTGGTCCCAAGGAGCGGGAGCTCC
GTTGTGTGGTCGGCGTCGGAGGGGAAGGCGGCGCAGGGCCTGGTGCTGAGGCTCGCCGGCGTCGAGTCCGGCGAGGTGGA
GCTGCAGCTGGAACTGGAATGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis