Browse Element(s) Details


OsAffx.16528.1.S1_at

Description tigr:9635.m03209
TID=OsAffx.16528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3264010/11hypothetical protein
LOC_Os01g731001/11hypothetical protein
LOC_Os11g412701/11hypothetical protein
LOC_Os11g187801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_s_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32630Os.15570.1.S1_at11/117+19460655..19462566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein
LOC_Os07g32650Os.8529.1.S1_at11/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32650Os.50755.1.S1_at9/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32660OsAffx.28717.1.S1_at10/117+19490279..19496842L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g32660OsAffx.18522.1.S1_at1/117+19490279..19496842L-ascorbate oxidase homolog precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16528.1.S1_at--259--1131Chr07:19466576..19466600 (25 bp)
AGTCAAATCCGGCACCCGAGACAGG
LOC_Os07g32640
OsAffx.16528.1.S1_at--190--5191Chr07:19466550..19466574 (25 bp)
GCAATTCGGTCCGTACAAAAATACG
LOC_Os07g32640
OsAffx.16528.1.S1_at--823--2391NONE
AAAATACGGTCCTCATCGGTCTAAG
NONE
OsAffx.16528.1.S1_at--944--7791Chr07:19465685..19465902 (25 bp)
GGTCCTCATCGGTCTAAGCTCAAGC
LOC_Os07g32640
OsAffx.16528.1.S1_at--920--9791Chr07:19465671..19465695 (25 bp)
TAAGCTCAAGCCTCATCCAAACATG
LOC_Os07g32640
OsAffx.16528.1.S1_at--777--1671Chr07:19465663..19465687 (25 bp)
AGCCTCATCCAAACATGCCATATGA
LOC_Os07g32640
OsAffx.16528.1.S1_at--189--2511Chr07:19465652..19465676 (25 bp)
AACATGCCATATGATGGGACCTTGA
LOC_Os07g32640
OsAffx.16528.1.S1_at--90--811Chr07:19465639..19465663 (25 bp)
ATGGGACCTTGAAGATGTGTTCGGT
LOC_Os07g32640
OsAffx.16528.1.S1_at--636--5431Chr07:19465603..19465627 (25 bp)
GAACCCATCACCCAAATACGGAATA
LOC_Os07g32640
OsAffx.16528.1.S1_at--33--40512Chr11:24237250..24237274 (25 bp)
CGATGGAACTCGATGAAACCGGCGA
LOC_Os11g41270
OsAffx.16528.1.S1_at--928--60514Chr11:24368004..24368052 (25 bp)
GAGTTGGTCCGACTAGATCCTCCGG
NONE
Target Sequence 
AGTCAAATCCGGCACCCGAGACAGGGGCAATTCGGTCCGTACAAAAATACGGTCCTCATCGGTCTAAGCTCAAGCCTCAT
CCAAACATGCCATATGATGGGACCTTGAAGATGTGTTCGGTGGTGGGTGTTGGAACCCATCACCCAAATACGGAATACAA
AATGGTTACAAAAGGAACGATGGAACTCGATGAAACCGGCGAGATCGTAATCGAGTTGGTCCGACTAGATCCTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis