Browse Element(s) Details


OsAffx.16572.1.S1_x_at

Description tigr:9632.m04428
TID=OsAffx.16572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4600011/11cyclin family protein, putative
LOC_Os11g183662/11Cycloartenol synthase, putative, expressed
LOC_Os05g397501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45970Os.52150.1.S1_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_x_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45980NANA4+27022063..27022636expressed protein
LOC_Os04g45990Os.48725.1.S1_at11/114+27024995..27027705YDG/SRA domain containing protein, expressed
LOC_Os04g46000OsAffx.16572.1.S1_x_at11/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46000OsAffx.16572.4.S1_x_at2/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46010OsAffx.4104.1.S1_at11/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46010Os.27576.1.S1_at1/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46030NANA4+27049237..27049893hypothetical protein
LOC_Os04g46040OsAffx.14288.1.S1_at11/114+27052758..27053127hypothetical protein
LOC_Os04g46050Os.38153.1.S1_at11/114+27056244..27063655Plasmid Maintenance Protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16572.1.S1_x_at--907--9271Chr04:27034928..27034952 (25 bp)
TCCTGGAGCGCGTGACCGAGCGGAA
LOC_Os04g46000
OsAffx.16572.1.S1_x_at--185--5871Chr04:27034923..27034947 (25 bp)
GAGCGCGTGACCGAGCGGAACGACG
LOC_Os04g46000
OsAffx.16572.1.S1_x_at--932--5771Chr04:27034834..27034858 (25 bp)
GACGAAGCCCGACATCACGGTGCGC
LOC_Os04g46000
OsAffx.16572.1.S1_x_at--920--9151Chr04:27034707..27034731 (25 bp)
TGCGCGTTCTCCGTGGACTCGTACA
LOC_Os04g46000
OsAffx.16572.1.S1_x_at--459--4571Chr04:27034706..27034730 (25 bp)
GCGCGTTCTCCGTGGACTCGTACAG
LOC_Os04g46000
OsAffx.16572.1.S1_x_at--897--7511Chr04:27034695..27034719 (25 bp)
GTGGACTCGTACAGCGTGCACCGCC
LOC_Os04g46000
OsAffx.16572.1.S1_x_at--136--4711Chr04:27033232..27033256 (25 bp)
GCGGCGTCAGCCTCCCGGAGATGAA
LOC_Os04g46000
OsAffx.16572.1.S1_x_at--71--4012Chr05:23265618..23265766 (25 bp)
CGTCGGCTTCGACCTGAACGTGTCG
NONE
OsAffx.16572.1.S1_x_at--720--8711Chr04:27033160..27033184 (25 bp)
TGTCGCCGGAGACGTTCGGCCACTA
LOC_Os04g46000
OsAffx.16572.1.S1_x_at--453--8352Chr11:10351778..10351802 (25 bp)
GGCGGCAAGGCTGCATTGCTTCCTG
LOC_Os11g18366
OsAffx.16572.1.S1_x_at--42--9073Chr05:23265597..23265620 (24 bp)
TGCATTGCTTCCTGTCCGAGGACGA
LOC_Os05g39750
Target Sequence 
TCCTGGAGCGCGTGACCGAGCGGAACGACGCGGCGGCGGCGGAGCTGGAGCTGGCGGTGGCGGGAGCTCCGGCGGCGTCG
GCGTTCCGGGCGACGACGAAGCCCGACATCACGGTGCGCGCGTACATGGCGCGCATCGCGCGGTTCGCGGGGTGCAGCCC
GGCGTGCTACGTGGTCGCCTACATCTACCTCGACCGCCTCCTCCGCCGCCGCCGGCGCGCGTGCGCGTTCTCCGTGGACT
CGTACAGCGTGCACCGCCTCCTCATCACCGCCGTGCTCGCCGCCGTCAAGTTCATGGACGACATATGCTACAACAACGCC
TACTTCGCCAAGGTCGGCGGCGTCAGCCTCCCGGAGATGAACTACCTCGAGGTCGACTTCCTCTTCGGCGTCGGCTTCGA
CCTGAACGTGTCGCCGGAGACGTTCGGCCACTACTGCGCCGTGCTCCAGTCCGAGATGCTCTGCCTGGAGCTGGAGCCGC
CGCCTTCTCCTTCCCCTGCTCCGGCGGCAAGGCTGCATTGCTTCCTGTCCGAGGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16572.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis