Browse Element(s) Details


OsAffx.16574.1.S1_at

Description tigr:9635.m03536
TID=OsAffx.16574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3578011/11protein kinase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35760OsAffx.16573.1.S1_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35760OsAffx.16573.1.S1_x_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35770OsAffx.5555.1.S1_at11/117+21424656..21425801serine/threonine kinase, putative
LOC_Os07g35780OsAffx.16574.1.S1_at11/117+21426984..21429759protein kinase family protein, putative
LOC_Os07g35790Os.26903.1.S1_at11/117+21432863..21435957Protein kinase domain containing protein, expressed
LOC_Os07g35800OsAffx.28767.1.S1_at10/117+21436453..21438502hypothetical protein
LOC_Os07g35810Os.12664.1.S1_at8/117+21439491..21443096Protein kinase domain containing protein, expressed
LOC_Os07g35820NANA7+21446393..21446749hypothetical protein
LOC_Os07g35830NANA7+21450497..21451046NA

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16574.1.S1_at--965--1771Chr07:21428950..21428974 (25 bp)
ACCGATGGTGCTGTTGCCGGTCAAG
LOC_Os07g35780
OsAffx.16574.1.S1_at--695--6271Chr07:21428901..21428925 (25 bp)
GATGTTGTGCCTGCCATTACGGGAG
LOC_Os07g35780
OsAffx.16574.1.S1_at--1020--7811Chr07:21427505..21427529 (25 bp)
GGTAATTACCTTGCCGACAGTGACA
LOC_Os07g35780
OsAffx.16574.1.S1_at--639--5652Chr07:22141581..22141605 (25 bp)
GACAGTGACAGTTGCCATCGTAGCT
NONE
OsAffx.16574.1.S1_at--260--6972Chr07:22141562..22141586 (25 bp)
GTAGCTGCAATTTCCCTTTGTATCT
NONE
OsAffx.16574.1.S1_at--1069--4172Chr07:22141549..22141573 (25 bp)
CCCTTTGTATCTGGAATGTGCGTAA
NONE
OsAffx.16574.1.S1_at--743--8231Chr07:21427329..21427445 (25 bp)
GGCAAAAGCAGACTCCAGACCTGAT
LOC_Os07g35780
OsAffx.16574.1.S1_at--388--5711Chr07:21427319..21427435 (25 bp)
GACTCCAGACCTGATAGAACCGAGG
LOC_Os07g35780
OsAffx.16574.1.S1_at--211--1511Chr07:21427275..21427299 (25 bp)
AGCACTGTTATCTCTGACATCACTG
LOC_Os07g35780
OsAffx.16574.1.S1_at--280--5671Chr07:21427260..21427284 (25 bp)
GACATCACTGCAAGTGGCAACCGAT
LOC_Os07g35780
OsAffx.16574.1.S1_at--1033--8132Chr07:22141331..22141355 (25 bp)
GGCAACCGATAACTTCCACAAAAGC
NONE
Target Sequence 
ACCGATGGTGCTGTTGCCGGTCAAGGCCGACGGGCTCACGCCGGCGCCGGATGTTGTGCCTGCCATTACGGGAGGTAAGA
ATAATTCAGCAAGCAAAATTCTGGTAATTACCTTGCCGACAGTGACAGTTGCCATCGTAGCTGCAATTTCCCTTTGTATC
TGGAATGTGCGTAAGAAGAGAAGATTGGCAAAAGCAGACTCCAGACCTGATAGAACCGAGGATTTTGAAAGTGTCAAGTC
AGCACTGTTATCTCTGACATCACTGCAAGTGGCAACCGATAACTTCCACAAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis