Browse Element(s) Details


OsAffx.16576.1.S1_at

Description tigr:9635.m03553
TID=OsAffx.16576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3595011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35900OsAffx.13097.1.S1_s_at11/117+21483129..21487020transposon protein, putative, unclassified
LOC_Os07g35910NANA7+21487545..21490730transposon protein, putative, unclassified
LOC_Os07g35920NANA7+21491369..21497524transposon protein, putative, unclassified
LOC_Os07g35930NANA7+21498291..21501852hypothetical protein
LOC_Os07g35940OsAffx.28771.1.S1_at10/117+21502121..21504662Beta-amylase, putative
LOC_Os07g35950OsAffx.16576.1.S1_at11/117+21508255..21509157hypothetical protein
LOC_Os07g35960OsAffx.30966.5.S1_at11/117+21511368..21515317expressed protein
LOC_Os07g35960OsAffx.30966.4.S1_x_at2/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_x_at1/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_at1/117+21511368..21515317expressed protein
LOC_Os07g35970OsAffx.28773.1.S1_at9/117+21517207..21518259Strictosidine synthase family protein
LOC_Os07g35980Os.12698.1.S1_at11/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_x_at2/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_at1/117+21518941..21521454expressed protein
LOC_Os07g35990OsAffx.28773.1.S1_at10/117+21529682..21530434Strictosidine synthase family protein
LOC_Os07g36000Os.27639.1.S1_x_at10/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36000OsAffx.8980.1.S1_at9/117+21531049..21535981transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16576.1.S1_at--568--6951Chr07:21508285..21508309 (25 bp)
GTAGAGTCTCCAAACACGACGTGTC
LOC_Os07g35950
OsAffx.16576.1.S1_at--592--3331Chr07:21508299..21508323 (25 bp)
CACGACGTGTCTCCATAAAGGTTAT
LOC_Os07g35950
OsAffx.16576.1.S1_at--353--6651Chr07:21508339..21508363 (25 bp)
GTTGTTGTGCATCCAAAGACTGACA
LOC_Os07g35950
OsAffx.16576.1.S1_at--314--5731Chr07:21508356..21508380 (25 bp)
GACTGACATGTTTTCACCCATTGTT
LOC_Os07g35950
OsAffx.16576.1.S1_at--401--7651Chr07:21508496..21508517 (22 bp)
GGGAGGCTACAACCTTGATCACGGT
LOC_Os07g35950
OsAffx.16576.1.S1_at--228--6451Chr07:21508509..21508533 (25 bp)
GATCACGGTCTATCAGGCTACAACC
LOC_Os07g35950
OsAffx.16576.1.S1_at--66--8851Chr07:21508535..21508559 (25 bp)
TGATCACAGTCTATCGTGCACCATC
LOC_Os07g35950
OsAffx.16576.1.S1_at--417--10671Chr07:21508570..21508594 (25 bp)
TTCCTGCCTTCCAGCGTGAGAGAAG
LOC_Os07g35950
OsAffx.16576.1.S1_at--789--1531Chr07:21509002..21509026 (25 bp)
AGCAGGCACTACATGTGGCGAGCAA
LOC_Os07g35950
OsAffx.16576.1.S1_at--306--1491Chr07:21509022..21509046 (25 bp)
AGCAAGGCCACAGGTCACGGGCGAC
LOC_Os07g35950
OsAffx.16576.1.S1_at--1006--7651Chr07:21509101..21509125 (25 bp)
GGGATCGAACGATGCCTCCAGTGGC
LOC_Os07g35950
Target Sequence 
GTAGAGTCTCCAAACACGACGTGTCTCCATAAAGGTTATGGCATCAAGGACACAGTTGTTGTGCATCCAAAGACTGACAT
GTTTTCACCCATTGTTTCTCACCAAAAGAAGAGAAGGGAGGCTACAACCTTGATCACGGTCTATCAGGCTACAACCCTGA
TCACAGTCTATCGTGCACCATCTCAGTGCGACTTCCTGCCTTCCAGCGTGAGAGAAGGAATGGGAAGAGAAAAGCATCGG
TGTGGGAGCAGGCACTACATGTGGCGAGCAAGGCCACAGGTCACGGGCGACGGTGACCGGCGATACGTGGAGGAGGGTGT
TAACAGCGACGGCAAAGGAGGGATGGGGATCGAACGATGCCTCCAGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis