Browse Element(s) Details


OsAffx.16606.1.A1_at

Description gb:NM_186364.1
DB_XREF= gi:34899813
TID=OsAffx.16606.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1092_A07.16 (OJ1092_A07.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g380203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16606.1.A1_at--1140--8071Chr07:22804339..22804363 (25 bp)
GGACGGAGGGAGCAAGGACGCCACC
LOC_Os07g38020
OsAffx.16606.1.A1_at--956--5091Chr07:22804543..22804567 (25 bp)
GCACGCAGCTCCATCGTTTCTCGTT
LOC_Os07g38020
OsAffx.16606.1.A1_at--138--5611Chr07:22804662..22804686 (25 bp)
GACAAGGAGAAGACCGCCCACAGCT
LOC_Os07g38020
OsAffx.16606.1.A1_at--178--7191NONE
GTCGGCGTCGGCAGTTTTGCCGCTC
NONE
OsAffx.16606.1.A1_at--965--4011Chr07:22804703..22804767 (25 bp)
CGTCGGCAGTTTTGCCGCTCTGCCA
NONE
OsAffx.16606.1.A1_at--879--4151Chr07:22804769..22804793 (25 bp)
CGCCGCACCGTGTCCAGAGGGATTG
NONE
OsAffx.16606.1.A1_at--617--1771Chr07:22804775..22804799 (25 bp)
ACCGTGTCCAGAGGGATTGGACGAT
NONE
OsAffx.16606.1.A1_at--299--4751Chr07:22804803..22804827 (25 bp)
GCTGATGCCGCGCTGGAGTGAGCGC
NONE
OsAffx.16606.1.A1_at--930--7731Chr07:22804856..22804880 (25 bp)
GGTGTCCTCCAACGTGCTGTCCGAG
NONE
OsAffx.16606.1.A1_at--41--8711Chr07:22804873..22804897 (25 bp)
TGTCCGAGGAGATCGCCCATGTCTT
NONE
OsAffx.16606.1.A1_at--1093--971Chr07:22804879..22804903 (25 bp)
AGGAGATCGCCCATGTCTTCAAGAC
NONE
Target Sequence 
GGACGGAGGGAGCAAGGACGCCACCGCCGTCGCGCCACGTCCGGGCCTGGCAGGGAGGGAACGGGGAGAGCGAGGACGCC
GTCGTCGTCACGCCGCGTCGGGGTCTGGTGGGGAGGGGACGGGGAGAACGAGGCTGCTGCCGTCGCGCCGCGTCGGGGCC
TGGCGGGGAGGGAACGGGGAGAGCGAGGACGCCGCCGCCATCGCGCACGCAGCTCCATCGTTTCTCGTTCCCCAACCTCA
GCTGGGGCAACCACCGCCTCCTCCGCTGCTCCAAGAACCCCGCCTCATCGCCTCCACCCGCGGTGCCGGACACCCCGTCG
CCGGACAAGGAGAAGACCGCCCACAGCTCCACTGACGGCGTCGGCGTCGGCAGTTTTGCCGCTCTGCCACCGCCGCACCG
TGTCCAGAGGGATTGGACGATGCGGCTGATGCCGCGCTGGAGTGAGCGCCGCCGCCGCTGGCGACGACCAAGAAGCGGGT
GTCCTCCAACGTGCTGTCCGAGGAGATCGCCCATGTCTTCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16606.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis