Browse Element(s) Details


OsAffx.16638.1.S1_at

Description tigr:9635.m03934
TID=OsAffx.16638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3945011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g39420NANA7+23611029..23611592retrotransposon protein, putative, unclassified
LOC_Os07g39430Os.10501.1.S1_at10/117+23617995..23621471mTERF family protein, expressed
LOC_Os07g39440OsAffx.28821.1.S1_at11/117+23622670..23626254Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g39450OsAffx.16638.1.S1_at11/117+23631179..23631717hypothetical protein
LOC_Os07g39460OsAffx.5577.1.S1_at11/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39460OsAffx.32220.1.A1_s_at1/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16638.1.S1_at--576--10651Chr07:23631234..23631258 (25 bp)
TTCCCCTGATAAAGTGCCCTTGCTG
LOC_Os07g39450
OsAffx.16638.1.S1_at--320--4551Chr07:23631249..23631273 (25 bp)
GCCCTTGCTGCTGCGTGAAGAACAT
LOC_Os07g39450
OsAffx.16638.1.S1_at--35--7531Chr07:23631275..23631299 (25 bp)
GTGGAGCTCACTGCAACGACAGATG
LOC_Os07g39450
OsAffx.16638.1.S1_at--579--5651Chr07:23631292..23631316 (25 bp)
GACAGATGCTAATCGCGGGCGCATT
LOC_Os07g39450
OsAffx.16638.1.S1_at--493--10371Chr07:23631316..23631340 (25 bp)
TTTTTTCACATGTCCTGACCACGAG
LOC_Os07g39450
OsAffx.16638.1.S1_at--26--9271Chr07:23631328..23631441 (25 bp)
TCCTGACCACGAGAAGGATGGTTCT
LOC_Os07g39450
OsAffx.16638.1.S1_at--1097--7891Chr07:23631436..23631460 (25 bp)
GGTTCTGGATGCAATTTCTGGTACA
LOC_Os07g39450
OsAffx.16638.1.S1_at--448--6191Chr07:23631489..23631513 (25 bp)
GAGGAAAGGCTACATTGCTGACAAG
LOC_Os07g39450
OsAffx.16638.1.S1_at--810--6791Chr07:23631600..23631624 (25 bp)
GTTATCTCTAGTTTCCATTGGGTTG
LOC_Os07g39450
OsAffx.16638.1.S1_at--768--4311Chr07:23631614..23631638 (25 bp)
CCATTGGGTTGGAGATAGTTCAGAT
LOC_Os07g39450
OsAffx.16638.1.S1_at--36--2892Chr07:23631643..23631667 (25 bp)
AAGGGCATGCTAGTTGGTTTTATTT
LOC_Os07g39450
Target Sequence 
TTCCCCTGATAAAGTGCCCTTGCTGCTGCGTGAAGAACATCGTGGAGCTCACTGCAACGACAGATGCTAATCGCGGGCGC
ATTTTTTTCACATGTCCTGACCACGAGAAGGATGGTTCTGGATGCAATTTCTGGTACAGGAAAGAAGGGTATGTGAAGTA
TCTTGAGAGGAAAGGCTACATTGCTGACAAGGAGCTAAGAGATGTGAAGCACATGTCAGAGAGGAAGAAGGCTGTGAACA
ATGAAGATGGTGGGGAAGATGAAGTGAAGAAGCTAATGTTATCTCTAGTTTCCATTGGGTTGGAGATAGTTCAGATCTTG
AAGGGCATGCTAGTTGGTTTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis