Browse Element(s) Details


OsAffx.16653.3.A1_at

Description tigr:9635.m04080
TID=OsAffx.16653.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4082011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40780OsAffx.16659.1.S1_at11/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40780OsAffx.27050.1.S1_x_at1/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40800Os.48371.1.S1_at9/117+24449939..24453879expressed protein
LOC_Os07g40800Os.57429.1.S1_s_at1/117+24449939..24453879expressed protein
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein
LOC_Os07g40820OsAffx.16653.3.A1_at11/117+24459197..24460741pentatricopeptide, putative
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16653.3.A1_at--96--7951Chr07:24459679..24459703 (25 bp)
GGATACAGGGTTTTTCATGGTGTTA
LOC_Os07g40820
OsAffx.16653.3.A1_at--65--5691Chr07:24459646..24459670 (25 bp)
GACATTGCACTGTACCATGGGTTGA
LOC_Os07g40820
OsAffx.16653.3.A1_at--465--51Chr07:24459614..24459638 (25 bp)
ATTGATCAGGATCAAGCGAGCTCGA
LOC_Os07g40820
OsAffx.16653.3.A1_at--916--4791Chr07:24459595..24459619 (25 bp)
GCTCGAGAAGCGACGGAGGTTTTCA
LOC_Os07g40820
OsAffx.16653.3.A1_at--595--6812Chr10:15171286..15171705 (25 bp)
GTTTTCAGAGAGATGGTTGCCACGG
NONE
OsAffx.16653.3.A1_at--349--4611Chr07:24459549..24459573 (25 bp)
GCGAGCCGAACATGCACACATACAT
LOC_Os07g40820
OsAffx.16653.3.A1_at--30--2191Chr07:24459534..24459558 (25 bp)
ACACATACATTATGCTGCTTCAGGG
LOC_Os07g40820
OsAffx.16653.3.A1_at--529--6371Chr07:24459478..24459502 (25 bp)
GATCCATTGGTGAACTTTGAGAGCA
LOC_Os07g40820
OsAffx.16653.3.A1_at--642--10751Chr07:24459462..24459486 (25 bp)
TTGAGAGCATCTTTGTTGGTGGGTT
LOC_Os07g40820
OsAffx.16653.3.A1_at--548--7511Chr07:24459376..24459400 (25 bp)
GTGGATGTGCCAAGGTTCGACTATA
LOC_Os07g40820
OsAffx.16653.3.A1_at--988--7611Chr07:24459258..24459282 (25 bp)
GGGACATCTTTCTGACTTATGGTGA
LOC_Os07g40820
Target Sequence 
GGATACAGGGTTTTTCATGGTGTTAAGGAGAAGGACATTGCACTGTACCATGGGTTGATGAAGGGATTGATCAGGATCAA
GCGAGCTCGAGAAGCGACGGAGGTTTTCAGAGAGATGGTTGCCACGGGGTGCGAGCCGAACATGCACACATACATTATGC
TGCTTCAGGGGCACTTGGGGAAGAGGGGAAGGAAGGGGAGGGATCCATTGGTGAACTTTGAGAGCATCTTTGTTGGTGGG
TTGGTGAAGGCCGGGAGGACATTGGAGGCAACTAAGTTTGTGGAGAGGACTATGTGGGGTGGAGTGGATGTGCCAAGGTT
CGACTATAACAAGTTCTTGTACTACTTTTCAAATGAGGATGGGGTGTCGATGTTTGAGGAAGTTGGAAGGAGGTTGAAGG
ATGTGGGGCATGTTGATCTTGGGGACATCTTTCTGACTTATGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16653.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis