Browse Element(s) Details


OsAffx.16663.3.S1_x_at

Description tigr:9632.m04096
TID=OsAffx.16663.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4283011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42800Os.51212.1.S1_at11/114+25121281..25122895expressed protein
LOC_Os04g42810OsAffx.29600.2.S1_s_at11/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42810OsAffx.29600.1.S1_at4/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42820OsAffx.29599.1.S1_s_at11/114+25125796..25126708hypothetical protein
LOC_Os04g42820OsAffx.29599.2.S1_at8/114+25125796..25126708hypothetical protein
LOC_Os04g42830OsAffx.16663.3.S1_x_at11/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_s_at4/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_x_at3/114+25127784..25129225Transferase family protein
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16663.3.S1_x_at--91--1051Chr04:25128265..25128289 (25 bp)
AGGTGCGGTTCATGTTCGTCGTGAA
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--711--731Chr04:25128254..25128278 (25 bp)
ATGTTCGTCGTGAACGGCCGCGGCC
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--576--7671Chr04:25128200..25128224 (25 bp)
GGGTTCTACGGGAACGCGCTCACGT
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--182--2611Chr04:25128188..25128212 (25 bp)
AACGCGCTCACGTTCGGCGTGGCGC
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--565--8711Chr04:25128130..25128154 (25 bp)
TGTCCCGCGCCGTGGAGCTGATCGC
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--907--871Chr04:25128086..25128110 (25 bp)
ATGGCCGACGGCTACGCGCAGTCTG
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--1158--1931Chr04:25128079..25128103 (25 bp)
ACGGCTACGCGCAGTCTGCGGCCGA
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--700--9951Chr04:25128008..25128032 (25 bp)
TACCTGGTGACCGACCTGACGAAGT
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--785--8931Chr04:25128001..25128025 (25 bp)
TGACCGACCTGACGAAGTCGCCGCT
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--189--1151Chr04:25127986..25128010 (25 bp)
AGTCGCCGCTGCACGAGGTGGACCT
LOC_Os04g42830
OsAffx.16663.3.S1_x_at--108--5791Chr04:25127925..25127949 (25 bp)
GACGACGCTGGCCACGTTCCACATG
LOC_Os04g42830
Target Sequence
AGGTGCGGTTCATGTTCGTCGTGAACGGCCGCGGCCGCGGCCACGGCGGGAGGCCGCTGCCCGAGGGGTTCTACGGGAAC
GCGCTCACGTTCGGCGTGGCGCGTACGACGGCCGGCGAGCTCTGCTCGGGCCCGCTGTCCCGCGCCGTGGAGCTGATCGC
TGCCGCGAGGGCGCGGACCATGGCCGACGGCTACGCGCAGTCTGCGGCCGACGCGGTGGTGCTCCGCGGGCGGCGGCGGT
TCACGACGGCGCGGACGTACCTGGTGACCGACCTGACGAAGTCGCCGCTGCACGAGGTGGACCTCGGGTGGGGGCGGCCG
CTGTTCGGCGGGCCGGCCACGACGACGCTGGCCACGTTCCACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16663.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis