Browse Element(s) Details


OsAffx.16692.1.S1_at

Description gb:NM_193014.1
DB_XREF= gi:34913111
GEN=OJ1339_F05.10
TID=OsAffx.16692.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1339_F05.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4323011/11Skp1 family, tetramerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43170Os.10034.1.S1_at10/117+25876719..25880707UMP-CMP kinase family protein, expressed
LOC_Os07g43180OsAffx.21309.1.S1_x_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43180OsAffx.21309.1.S1_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43190NANA7+25885163..25885573hypothetical protein
LOC_Os07g43200OsAffx.21308.1.S1_at4/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200OsAffx.21308.2.S1_x_at2/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200Os.41653.1.S1_x_at1/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43210OsAffx.28883.1.S1_at10/117+25893217..25893711hypothetical protein
LOC_Os07g43220OsAffx.9082.1.S1_at11/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43220OsAffx.21309.1.S1_x_at1/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16692.1.S1_at--652--4971Chr07:25900442..25900466 (25 bp)
GCATCCGGTGTTTGATTCGCCGGAG
LOC_Os07g43230
OsAffx.16692.1.S1_at--955--3731Chr07:25900521..25900545 (25 bp)
CTCAAGAGCTTGGACGGCAAGACGG
LOC_Os07g43230
OsAffx.16692.1.S1_at--251--5991Chr07:25900578..25900602 (25 bp)
GAGACCATCGGGAACCTCATCGACG
LOC_Os07g43230
OsAffx.16692.1.S1_at--135--8811Chr07:25900639..25900663 (25 bp)
TGTTCGTCAGCTACAAGGCCCTCAT
LOC_Os07g43230
OsAffx.16692.1.S1_at--242--2231Chr07:25900651..25900675 (25 bp)
ACAAGGCCCTCATGAAGGTGATCGA
LOC_Os07g43230
OsAffx.16692.1.S1_at--130--1631Chr07:25900762..25900786 (25 bp)
AGCTGGACGAGGACAACATCCTCTT
LOC_Os07g43230
OsAffx.16692.1.S1_at--810--2011Chr07:25900810..25900834 (25 bp)
ACTACCTCAAAATCACTGGACTCTC
LOC_Os07g43230
OsAffx.16692.1.S1_at--507--2451Chr07:25900818..25900842 (25 bp)
AAAATCACTGGACTCTCCAAACTCA
LOC_Os07g43230
OsAffx.16692.1.S1_at--57--9491Chr07:25900831..25900855 (25 bp)
TCTCCAAACTCACCGACCAAAGGTT
LOC_Os07g43230
OsAffx.16692.1.S1_at--1117--10611Chr07:25900854..25900878 (25 bp)
TTCGTCGACCCGTTTAACACCAGCA
LOC_Os07g43230
OsAffx.16692.1.S1_at--1075--5791Chr07:25900860..25900884 (25 bp)
GACCCGTTTAACACCAGCAACAAGA
LOC_Os07g43230
Target Sequence 
GCATCCGGTGTTTGATTCGCCGGAGAAGGTGGTGCCCGAGGTGGCGGAGGAGGAGGAGAGCGGCGGCAGGATGATCACCC
TCAAGAGCTTGGACGGCAAGACGGTCAAGGTGAAGGAGGCGTCGGCGAGGCTGTCCGAGACCATCGGGAACCTCATCGAC
GACGGCCGCCGCCGCGGCGACGAGACCATCCCGCGCCTGTTCGTCAGCTACAAGGCCCTCATGAAGGTGATCGAGTACTG
CGACGAGCACGCCAACAACAAGGCCGACACCGACGAGCGGAAAGAGGAACTCAAGAACTGGGACAAGGCCTTCATCGACA
AGCTGGACGAGGACAACATCCTCTTCGTCGAAGTCCTCGCGGCCTCCAACTACCTCAAAATCACTGGACTCTCCAAACTC
ACCGACCAAAGGTTCGTCGACCCGTTTAACACCAGCAACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis